WormBase Tree Display for CDS: PPA46709
expand all nodes | collapse all nodes | view schema
PPA46709 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (21) | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00569 (Zinc finger, ZZ type); contains similarity to Interpro domains IPR043145 (Zinc finger, ZZ-type superfamily), IPR000433 (Zinc finger, ZZ-type) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304488 | ||||
Corresponding_transcript | PPA46709.1 | |||||
Corresponding_protein | PP74914 | |||||
Corresponding_oligo_set | GPL14372_Probes_73760 | |||||
GPL14372_Probes_73761 | ||||||
GPL14372_Probes_73762 | ||||||
Matching_cDNA | FE935129 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_73760 | |||||
GPL14372_Probes_73761 | ||||||
GPL14372_Probes_73762 | ||||||
RNASeq_FPKM | WBls:0000032 | 21.2868 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 15.4704 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |