WormBase Tree Display for CDS: PPA46720
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PPA46720 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 85 | 91 | |||
584 | 684 | |||||
905 | 976 | |||||
1881 | 1933 | |||||
2033 | 2120 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00957 (Synaptobrevin); contains similarity to Interpro domains IPR016444 (Synaptobrevin/Vesicle-associated membrane protein), IPR001388 (Synaptobrevin-like) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00304499 | ||||
Corresponding_transcript | PPA46720.1 | |||||
Corresponding_protein | PP74944 | |||||
Corresponding_oligo_set | GPL14372_Probes_73645 | |||||
Matching_cDNA | FG105818 | Inferred_automatically | transcript_builder.pl | |||
AW115502 | Inferred_automatically | transcript_builder.pl | ||||
CN656974 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_73645 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 23.5808 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |