WormBase Tree Display for CDS: PPA46836
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| PPA46836 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (15) | |||||
| DB_info | DB_remark | PPA-FUST-1 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR034870 (TAF15/EWS/TLS family), IPR001876 (Zinc finger, RanBP2-type), IPR035979 (RNA-binding domain superfamily), IPR036443 (Zinc finger, RanBP2-type superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | ||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00304615 | ||||
| Corresponding_transcript | PPA46836.1 | |||||
| Corresponding_protein | PP75462 | |||||
| Corresponding_oligo_set | GPL14372_Probes_67700 | |||||
| Matching_cDNA | FE931837 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_67700 | |||||
| RNASeq_FPKM | WBls:0000032 | 29.2707 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 7.97762 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 17 Sep 2019 11:26:14 | WBPerson4055 | ||||
| Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
| [190917 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
