WormBase Tree Display for CDS: PPA46860
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PPA46860 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 827 | 871 | |||
1018 | 1098 | |||||
1354 | 1460 | |||||
1785 | 1879 | |||||
2063 | 2139 | |||||
DB_info | DB_remark | PPA-SYX-6 protein; contains similarity to Pfam domain PF05739 (SNARE domain); contains similarity to Interpro domain IPR000727 (Target SNARE coiled-coil homology domain) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00304639 | ||||
Corresponding_transcript | PPA46860.1 | |||||
Corresponding_protein | PP74746 | |||||
Matching_cDNA | FG096374 | Inferred_automatically | transcript_builder.pl | |||
FG100400 | Inferred_automatically | transcript_builder.pl | ||||
AW096918 | Inferred_automatically | transcript_builder.pl | ||||
AW114341 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000032 | 86.6739 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 15.753 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |