WormBase Tree Display for CDS: PPA46877
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PPA46877 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons (34) | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00439 (Bromodomain); contains similarity to Interpro domains IPR001487 (Bromodomain), IPR036427 (Bromodomain-like superfamily) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00304656 | ||||
Corresponding_transcript | PPA46877.1 | |||||
Corresponding_protein | PP75358 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | FE936927 | Inferred_automatically | transcript_builder.pl | |||
FE934638 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 51.8238 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 42.0757 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 25 Sep 2019 14:28:56 | WBPerson4055 | ||||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
[190925 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |