WormBase Tree Display for CDS: PPA46918
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| PPA46918 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 93 | 4427 | |||
| DB_info | DB_remark | contains similarity to Pfam domains PF00078 (Reverse transcriptase (RNA-dependent DNA polymerase)), PF00665 (Integrase core domain), PF17919 (RNase H-like domain found in reverse transcriptase), PF17921 (Integrase zinc binding domain); contains similarity to Interpro domains IPR043502 (DNA/RNA polymerase superfamily), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR001878 (Zinc finger, CCHC-type), IPR021109 (Aspartic peptidase domain superfamily), IPR000477 (Reverse transcriptase domain), IPR001584 (Integrase, catalytic core), IPR043128 (Reverse transcriptase/Diguanylate cyclase domain), IPR041577 (Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain), IPR041588 (Integrase zinc-binding domain) | ||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00304697 | ||||
| Corresponding_transcript | PPA46918.1 | |||||
| Corresponding_protein | PP74442 | |||||
| Corresponding_oligo_set | GPL14372_Probes_32384 | |||||
| Microarray_results | GPL14372_Probes_32384 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
| Method | curated |
