WormBase Tree Display for CDS: PPA46945
expand all nodes | collapse all nodes | view schema
PPA46945 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 2 | 176 | |||
597 | 673 | |||||
794 | 920 | |||||
1041 | 1156 | |||||
1381 | 1503 | |||||
DB_info | DB_remark | PPA-PINN-1 protein; contains similarity to Pfam domains PF00397 (WW domain), PF00639 (PPIC-type PPIASE domain); contains similarity to Interpro domains IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR001202 (WW domain), IPR036020 (WW domain superfamily) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304724 | ||||
Corresponding_transcript | PPA46945.1 | |||||
Corresponding_protein | PP74575 | |||||
Corresponding_oligo_set | GPL14372_Probes_68882 | |||||
GPL14372_Probes_68883 | ||||||
GPL14372_Probes_68884 | ||||||
GPL14372_Probes_68885 | ||||||
Matching_cDNA | AA193742 | Inferred_automatically | transcript_builder.pl | |||
FG100522 | Inferred_automatically | transcript_builder.pl | ||||
CN657733 | Inferred_automatically | transcript_builder.pl | ||||
FG103260 | Inferred_automatically | transcript_builder.pl | ||||
CN657467 | Inferred_automatically | transcript_builder.pl | ||||
CN657143 | Inferred_automatically | transcript_builder.pl | ||||
CN657859 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_68882 | |||||
GPL14372_Probes_68883 | ||||||
GPL14372_Probes_68884 | ||||||
GPL14372_Probes_68885 | ||||||
RNASeq_FPKM | WBls:0000032 | 102.081 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 137.807 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |