WormBase Tree Display for CDS: PPA46965
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| PPA46965 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 97 | |||
| 144 | 246 | |||||
| 315 | 360 | |||||
| DB_info | DB_remark | PPA-SNR-5 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR016487 (Sm-like protein Lsm6/SmF), IPR010920 (LSM domain superfamily) | ||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00304744 | ||||
| Corresponding_transcript | PPA46965.1 | |||||
| Corresponding_protein | PP74499 | |||||
| Matching_cDNA | FG097502 | Inferred_automatically | transcript_builder.pl | |||
| FG101573 | Inferred_automatically | transcript_builder.pl | ||||
| FG095397 | Inferred_automatically | transcript_builder.pl | ||||
| FG097807 | Inferred_automatically | transcript_builder.pl | ||||
| FG094799 | Inferred_automatically | transcript_builder.pl | ||||
| FG100433 | Inferred_automatically | transcript_builder.pl | ||||
| FG097716 | Inferred_automatically | transcript_builder.pl | ||||
| AI988738 | Inferred_automatically | transcript_builder.pl | ||||
| FG099736 | Inferred_automatically | transcript_builder.pl | ||||
| FG100505 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000032 | 86.5603 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 102.331 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
| Method | curated |
