WormBase Tree Display for CDS: PPA47004
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PPA47004 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrX | |||
Structure | Source_exons | 1 | 89 | |||
309 | 370 | |||||
441 | 522 | |||||
675 | 759 | |||||
805 | 924 | |||||
966 | 1102 | |||||
1174 | 1272 | |||||
1393 | 1508 | |||||
1705 | 1859 | |||||
2114 | 2209 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | ||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00304857 | ||||
Corresponding_transcript | PPA47004.1 | |||||
Corresponding_protein | PP28062 | |||||
Corresponding_oligo_set | GPL14372_Probes_39140 | |||||
Microarray_results | GPL14372_Probes_39140 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 04 Jul 2019 16:17:58 | WBPerson4055 | ||||
Remark | [190704 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |