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WormBase Tree Display for CDS: PPA47043

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Name Class

PPA47043EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrI
StructureSource_exons (13)
DB_infoDB_remarkcontains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily)
OriginFrom_laboratoryHX
SpeciesPristionchus pacificus
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00304897
Corresponding_transcriptPPA47043.1
Corresponding_proteinPP75035
Corresponding_oligo_setGPL14372_Probes_54519
GPL14372_Probes_54520
GPL14372_Probes_54521
GPL14372_Probes_54522
GPL14372_Probes_54523
Matching_cDNA (12)
Microarray_resultsGPL14372_Probes_54519
GPL14372_Probes_54520
GPL14372_Probes_54521
GPL14372_Probes_54522
GPL14372_Probes_54523
RNASeq_FPKMWBls:000003239.7533From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010116.7685From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed22 Jul 2019 16:55:36WBPerson4055
Remark[190722 mh6] This gene has been split based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated