WormBase Tree Display for CDS: PPA47190
expand all nodes | collapse all nodes | view schema
PPA47190 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons | 1 | 87 | |||
1227 | 1359 | |||||
2164 | 2301 | |||||
2350 | 2468 | |||||
2542 | 2612 | |||||
2658 | 2801 | |||||
2846 | 2951 | |||||
3010 | 3068 | |||||
3400 | 3421 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00230 (Major intrinsic protein); contains similarity to Interpro domains IPR023271 (Aquaporin-like), IPR000425 (Major intrinsic protein) | ||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00305059 | ||||
Corresponding_transcript | PPA47190.1 | |||||
Corresponding_protein | PP75636 | |||||
Corresponding_oligo_set | GPL14372_Probes_84212 | |||||
GPL14372_Probes_84213 | ||||||
GPL14372_Probes_84214 | ||||||
GPL14372_Probes_84215 | ||||||
Matching_cDNA | FG101628 | Inferred_automatically | transcript_builder.pl | |||
FG100838 | Inferred_automatically | transcript_builder.pl | ||||
FG098307 | Inferred_automatically | transcript_builder.pl | ||||
FG101829 | Inferred_automatically | transcript_builder.pl | ||||
FE940881 | Inferred_automatically | transcript_builder.pl | ||||
FE939857 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_84212 | |||||
GPL14372_Probes_84213 | ||||||
GPL14372_Probes_84214 | ||||||
GPL14372_Probes_84215 | ||||||
RNASeq_FPKM | WBls:0000032 | 30.975 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 48.7805 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 08 Oct 2019 15:59:55 | WBPerson4055 | ||||
Remark | [191008 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |