WormBase Tree Display for CDS: PPA47253
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| PPA47253 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons | 1 | 90 | |||
| 307 | 353 | |||||
| 443 | 539 | |||||
| 697 | 831 | |||||
| 993 | 1139 | |||||
| 1315 | 1424 | |||||
| 1678 | 1768 | |||||
| 2018 | 2124 | |||||
| 2618 | 2699 | |||||
| 2880 | 2948 | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF01088 (Ubiquitin carboxyl-terminal hydrolase, family 1), PF18031 (Ubiquitin carboxyl-terminal hydrolases); contains similarity to Interpro domains IPR041507 (Peptidase C12, C-terminal domain), IPR038765 (Papain-like cysteine peptidase superfamily), IPR036959 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily), IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase), IPR017390 (Ubiquitinyl hydrolase, UCH37 type) | ||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00305144 | ||||
| Corresponding_transcript | PPA47253.1 | |||||
| Corresponding_protein | PP75592 | |||||
| Corresponding_oligo_set | GPL14372_Probes_72611 | |||||
| GPL14372_Probes_72612 | ||||||
| GPL14372_Probes_72613 | ||||||
| GPL14372_Probes_72614 | ||||||
| GPL14372_Probes_72615 | ||||||
| GPL14372_Probes_72616 | ||||||
| Matching_cDNA | FG106717 | Inferred_automatically | transcript_builder.pl | |||
| FG103412 | Inferred_automatically | transcript_builder.pl | ||||
| FG105071 | Inferred_automatically | transcript_builder.pl | ||||
| FG104431 | Inferred_automatically | transcript_builder.pl | ||||
| FG102990 | Inferred_automatically | transcript_builder.pl | ||||
| AW052438 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_72611 | |||||
| GPL14372_Probes_72612 | ||||||
| GPL14372_Probes_72613 | ||||||
| GPL14372_Probes_72614 | ||||||
| GPL14372_Probes_72615 | ||||||
| GPL14372_Probes_72616 | ||||||
| RNASeq_FPKM | WBls:0000032 | 25.708 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 52.054 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Nov 2019 11:37:27 | WBPerson4055 | ||||
| Remark | [191108 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
