WormBase Tree Display for CDS: PPA47254
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| PPA47254 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (13) | |||||
| DB_info | DB_remark | contains similarity to Pfam domain PF00850 (Histone deacetylase domain); contains similarity to Interpro domains IPR023696 (Ureohydrolase domain superfamily), IPR003084 (Histone deacetylase), IPR023801 (Histone deacetylase domain), IPR000286 (Histone deacetylase family), IPR037138 (Histone deacetylase domain superfamily) | ||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00305145 | ||||
| Corresponding_transcript | PPA47254.1 | |||||
| Corresponding_protein | PP28858 | |||||
| Corresponding_oligo_set | GPL14372_Probes_78073 | |||||
| GPL14372_Probes_78074 | ||||||
| GPL14372_Probes_78075 | ||||||
| GPL14372_Probes_78076 | ||||||
| GPL14372_Probes_78077 | ||||||
| Matching_cDNA | FG104590 | Inferred_automatically | transcript_builder.pl | |||
| FG103271 | Inferred_automatically | transcript_builder.pl | ||||
| AI987004 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_78073 | |||||
| GPL14372_Probes_78074 | ||||||
| GPL14372_Probes_78075 | ||||||
| GPL14372_Probes_78076 | ||||||
| GPL14372_Probes_78077 | ||||||
| RNASeq_FPKM | WBls:0000032 | 22.7016 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 29.7909 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Nov 2019 11:45:39 | WBPerson4055 | ||||
| Remark | [191108 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
