WormBase Tree Display for CDS: PPA47267
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PPA47267 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons | 1 | 12 | |||
93 | 137 | |||||
297 | 356 | |||||
558 | 602 | |||||
780 | 884 | |||||
1095 | 1183 | |||||
1263 | 1326 | |||||
2205 | 2333 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00929 (Exonuclease); contains similarity to Interpro domains IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR013520 (Exonuclease, RNase T/DNA polymerase III) | ||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00305160 | ||||
Corresponding_transcript | PPA47267.1 | |||||
Corresponding_protein | PP75633 | |||||
Corresponding_oligo_set | GPL14372_Probes_65732 | |||||
GPL14372_Probes_65733 | ||||||
GPL14372_Probes_65734 | ||||||
Matching_cDNA | FG104017 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_65732 | |||||
GPL14372_Probes_65733 | ||||||
GPL14372_Probes_65734 | ||||||
RNASeq_FPKM | WBls:0000032 | 192.238 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 32.444 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 14 Nov 2019 13:39:11 | WBPerson4055 | ||||
Remark | [191114 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |