WormBase Tree Display for CDS: PPA47271
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| PPA47271 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (22) | |||||
| DB_info | DB_remark | contains similarity to Pfam domain PF00225 (Kinesin motor domain); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001752 (Kinesin motor domain), IPR036961 (Kinesin motor domain superfamily), IPR027640 (Kinesin-like protein) | ||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00305165 | ||||
| Corresponding_transcript | PPA47271.1 | |||||
| Corresponding_protein | PP75688 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64329 | |||||
| GPL14372_Probes_64330 | ||||||
| GPL14372_Probes_64331 | ||||||
| GPL14372_Probes_64332 | ||||||
| GPL14372_Probes_64334 | ||||||
| Matching_cDNA | AW097132 | Inferred_automatically | transcript_builder.pl | |||
| FE937488 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_64329 | |||||
| GPL14372_Probes_64330 | ||||||
| GPL14372_Probes_64331 | ||||||
| GPL14372_Probes_64332 | ||||||
| GPL14372_Probes_64334 | ||||||
| RNASeq_FPKM | WBls:0000032 | 42.5792 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 27.5754 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 14 Nov 2019 14:13:27 | WBPerson4055 | ||||
| Remark | [191114 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
