WormBase Tree Display for CDS: PPA47273
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PPA47273 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons (14) | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00038 (Intermediate filament protein), PF00932 (Lamin Tail Domain); contains similarity to Interpro domains IPR039008 (Intermediate filament, rod domain), IPR016451 (Intermediate filament, ifa/ifb), IPR042180 (), IPR001322 (Lamin tail domain), IPR036415 (Lamin tail domain superfamily) | ||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00305167 | ||||
Corresponding_transcript | PPA47273.1 | |||||
Corresponding_protein | PP75481 | |||||
Corresponding_oligo_set | GPL14372_Probes_15898 | |||||
GPL14372_Probes_15899 | ||||||
GPL14372_Probes_15900 | ||||||
GPL14372_Probes_15901 | ||||||
GPL14372_Probes_15902 | ||||||
Matching_cDNA | FG095593 | Inferred_automatically | transcript_builder.pl | |||
FE940589 | Inferred_automatically | transcript_builder.pl | ||||
FG097471 | Inferred_automatically | transcript_builder.pl | ||||
FG095802 | Inferred_automatically | transcript_builder.pl | ||||
FE935387 | Inferred_automatically | transcript_builder.pl | ||||
FE935259 | Inferred_automatically | transcript_builder.pl | ||||
DV018727 | Inferred_automatically | transcript_builder.pl | ||||
FE935423 | Inferred_automatically | transcript_builder.pl | ||||
FG101281 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_15898 | |||||
GPL14372_Probes_15899 | ||||||
GPL14372_Probes_15900 | ||||||
GPL14372_Probes_15901 | ||||||
GPL14372_Probes_15902 | ||||||
RNASeq_FPKM | WBls:0000032 | 9.89245 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 25.7029 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 14 Nov 2019 16:03:01 | WBPerson4055 | ||||
Remark | [191114 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |