WormBase Tree Display for CDS: ZK337.1b
expand all nodes | collapse all nodes | view schema
| ZK337.1b | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK337 | ||
| Structure | Source_exons (18) | ||||
| DB_info | Database | TrEMBL | UniProtAcc | O46015 | |
| UniProt | UniProtAcc | O46015 | |||
| AlphaFold | entry | O46015 | |||
| NCBI_protein | GI_number | GI:31873110 | |||
| Protein_id | CHROMOSOME_I | CAB05007 | 2 | ||
| DB_remark | TEP-1 protein; contains similarity to Pfam domains PF00207 (Alpha-2-macroglobulin family), PF01835 (MG2 domain), PF07677 (A-macroglobulin receptor binding domain), PF07678 (A-macroglobulin TED domain), PF07703 (Alpha-2-macroglobulin bait region domain), PF17791 (Macroglobulin domain MG3); contains similarity to Interpro domains IPR047565 (Alpha-macroglobulin-like, thiol-ester bond-forming region), IPR041555 (Macroglobulin domain MG3), IPR011625 (Alpha-2-macroglobulin, bait region domain), IPR001599 (Alpha-2-macroglobulin), IPR011626 (Alpha-macroglobulin-like, TED domain), IPR002890 (Macroglobulin domain), IPR036595 (Alpha-macroglobulin, receptor-binding domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR009048 (Alpha-macroglobulin, receptor-binding), IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Accession_evidence | NDB | CEK123C9R | ||
| Inferred_automatically | transcript_builder | ||||
| Visible | Gene | WBGene00013969 | |||
| Corresponding_transcript | ZK337.1b.1 | ||||
| Corresponding_protein | CE34450 | ||||
| Corresponding_PCR_product | cenix:73-a3 | ||||
| mv_ZK337.1a | |||||
| mv_ZK337.1b | |||||
| sjj_ZK337.1 | |||||
| Corresponding_oligo_set (18) | |||||
| Matching_cDNA (25) | |||||
| RNAi_result | WBRNAi00004926 | ||||
| WBRNAi00115767 | |||||
| WBRNAi00038259 | |||||
| WBRNAi00059345 | |||||
| Microarray_results (26) | |||||
| RNASeq_FPKM (74) | |||||
| Remark | Annotated using Pfam | ||||
| [030604 ar2] Added another exon to the 3' end as suggested by yk76f4.3. Also removed connection to yk100a11 as this was erroneous | Curator_confirmed | WBPerson1847 | |||
| Method | curated |
