WormBase Tree Display for Expression_cluster: [cgc5767]:cluster_55
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[cgc5767]:cluster_55 | Description | Early embryonic development gene expression profile. | |
---|---|---|---|
Species | Caenorhabditis elegans | ||
Algorithm | QT clustering | ||
Reference | WBPaper00005767 | ||
Microarray_results | Aff_ZC434.6 | ||
Aff_C08B11.9 | |||
Aff_F31D4.1 | |||
Aff_H06O01.3 | |||
Aff_T05H4.8 | |||
Aff_T27F7.2 | |||
Gene | WBGene00000148 | ||
WBGene00007436 | |||
WBGene00009289 | |||
WBGene00010370 | |||
WBGene00020271 | |||
WBGene00020273 | |||
WBGene00020867 | |||
Attribute_of | Microarray_experiment | [cgc5767]:PC6 | |
[cgc5767]:PC32 | |||
[cgc5767]:0_min | |||
[cgc5767]:23_min | |||
[cgc5767]:41_min | |||
[cgc5767]:53_min | |||
[cgc5767]:66_min | |||
[cgc5767]:83_min | |||
[cgc5767]:101_min | |||
[cgc5767]:122_min | |||
[cgc5767]:143_min | |||
[cgc5767]:186_min | |||
Remark | Clusters were generated by the QT clustering algorithm. The algorithm assembles a series of clusters ordered by size, largest first, with no limit on the number of clusters other than the coherence (cluster diameter) defined a priori (0.7 in our clusters). To ensure robust clusters the distance metric used for clustering was 1-Ravg , where Ravg was the average Pearson correlation coefficient between moving average profiles over 20 realizations of the data plus simulated noise. Noise was generated by a two-component model consisting of an additive Gaussian background with standard deviation 2 ppm, and a multiplicative Gaussian sampling error with s.d.=0.1. Simulated data were floored at 1 ppm. | ||
Type: Co-expression Cluster |