Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Feature: WBsf125901

expand all nodes | collapse all nodes | view schema

Name Class

WBsf125901SMapS_parentSequenceC09G5
Sequence_detailsFlanking_sequencesTTTTTGTCGAATAAACTCATTTTCATTATCTGTAATTTGATCTTGCAACACGAGCCCTTT
Mapping_targetC09G5
Source_location190CHROMOSOME_II1070821110708212
OriginSpeciesCaenorhabditis elegans
VisibleDescriptionpolyA_site defined by RNASeq short reads (Hillier et al.)
Defined_byDefined_by_sequenceAdult_spe-9_23dC_8days_post-L4_molt_bundle_of_reads_supporting_polya_II_10708204_10708205_-_wb170
Adult_spe-9_23dC_8days_post-L4_molt_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
mid-L1_20dC_4hrs_post-L1_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
mid-L2_20dC_14hrs_post-L1_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
mid-L3_20dC_25hrs_post-L1_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
mid-L4_20dC_36hrs_post-L1_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
Young_Adult_25dC_46hrs_post-L1_bundle_of_reads_supporting_polyA_II_10708204_-_wb170
Defined_by_paperWBPaper00037808
WBPaper00037948
Defined_by_analysisRNASeq_Hillier.Adult_spe-9
RNASeq_Hillier.L1_larva
RNASeq_Hillier.L3_larva
RNASeq_Hillier.L4_soma_JK1107_no_DNaseI
RNASeq_Hillier.Young_Adult
RNASeq_Hillier.L4_larva
RNASeq_Hillier.L1_larva_lin-35
RNASeq_Hillier.L2_larva
RNASeq_Fire.all_stages_ssRNALigSeq
Remark[110125 gw3] This polyA_site feature was defined by the Bartel paper.
Bartel data confident_cleavagesite score: 9795.0
MethodpolyA_site