WormBase Tree Display for Feature: WBsf928773
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| WBsf928773 | SMap | S_parent | Sequence | OVOC_OM2_79 |
|---|---|---|---|---|
| Sequence_details | Flanking_sequences | gaaaatgaaaagaaaaagagccagacttcaatataagcagcaaaaactgcagcttccaactatcaaaaaccaaaaattgattggcctcaaacttcctggataacatgataattaatcaaacaaccatcaaattcgccccatcagtagtggcatatgcccgctgacagcacgccgatccatcccaaaaaagctaaatattttctatccatttcaggaaaggctaaacaagcattcatcgctaagtgctcacgaacataatttaaaagattggtcctgacacgaaagtatgacaacaatatgtgttcgatctgttgaaattgcttggatattctggatatcttgtgggtaattcggtatgtggtacttgtgacatccttaggtatataaactgttttgttaatactttcttcttccttacag | aaatgcatggactattatcacttactgtgcgcccgatacatattcaaagaataagtgctctaaaagcaattcgttatttctccaaaactacccaaccacttcgatgtaaggttgaagtcggtaaagaagcgaaaagtttggttgagaaagcagcgagaaagttggatccgttttctgctgtgcaaaatgaaccgaccgcgaagttcgttgctttcaaagaatttattaatgtgaaaaagagaattttgcggaattaaaatcttgattttattttagtttcttttcagcttcagtcatcatttgggctttcatggtttcgaactgtaccctattcaaggtcaagttattgcatgggccattgtacttgtacttatagcctattatgcttccgcaaaaattgaagtcgtcattgatcgaagtaaacgtcatcattttttagaatcgcatattatatgatcttctactcgtactttatgttcttagaagcgcaaagatgtcatagtctcagaatgaaatataataaacaaggcgatgattgaatggtttcgaaatgcagctgtactaataactaattagttcactatttttatgatgaggttttccgatccggtaatctcggaaaggtgacacctacattagtagctatatgttatttgattctttaattctagatgtctcgcgtttttttcaatttagtgtctaaaatactcactgtttttcaatgctctacgtatatcaaaagtagagcgcacttttgaaggcttataaaaaaataaagttttgatcatcattaagagctaaattttgcatttatggattggtatttagagcataagaaaagtagaattccagtatttttataaattctcaaggatatcgagagcttccttctttatcatgtcgaaactatgcatctattaaaaattagatatcatcgtcatgttataatgattgtgaatttttaaggctacaagaacgcgccatttacttgggctactatgaaagatcgtgatcgtgaatatgttgcttttgggtaaacttttcgaaaataaattattcattcattagactgttcaagattcattgccatttattgattttcggactgtactaaatcgataactgaaataatgatatttatttttggatgtttcagtatatttggaaaattagttcgtcttttattttagcgaaactttggaaatatcaaacaatgtgtcggttatttaattcattcgcacaaaggatctttagcaatttttaataatggattaatttttacagtttcgaaccaacaccagcaatatcgcgtttggatctgatggaaacactgcaagaagagatgattgaagaagcaagaagacgtggtactcgtaagtaaatcaagagcttgcacagcattttcttataattaacataatcgatcccgaactgattttgaaattttttttttttatcccagtatcatcacagtattctgaatcgtagtgaagatgatgtagtaaagagcagtgattatcatttttactgccaagttatgacagaatgctatcatcttaaatttattttatttagtttcatgtattattccttataactcttgtcagtatggattcagaaggaaaaagaaaagcttcatgtattattccttataactcttgtcagtatggattcagaaggaaaaagaaaagcgacccagactttccagaaaagttgtggaggagaattttgaaaataacagttttttagtcagattttccattaggtgtgtcgtgttggattttttcacattacgaatatagtatgactgtaatcaaatatttctttagatgatattatcgcagctcttattcttccgcaattcaaagactgcttctagtttaatttgttaagcatgcatggcattgctggatagttcgaagcgatcttctctagcttgtcattttcgatgcttcgaaactttcgctttaatattctagaacttacgattcatattctcacttccctttgtcatggaattgcttttctacgataaattaatgtaaatttcactcttctatttcattaattgaactgtatggtttagataaaatatcttgtagcattattatagtattagctgttgaacagtttatcagtacagtagcttcttgtttagaggtattgcgaacactttaaatttacgatggagcaagtagtttttttgaagatttacaagaaaaaaaaaatgtttcaagggatactgtgctttgttttttccgagaagggaaaaattcgcaaatcaaaagcc | |
| Mapping_target | OVOC_OM2_79 | |||
| Origin | Species | Onchocerca volvulus | ||
| Visible | Description | SL1 trans-splice leader acceptor site | ||
| SO_term | SO:0000706 | |||
| Defined_by | Defined_by_analysis | RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000104.Male.WBbt:0007833.PRJEB2965.ERX200394 | 27 | |
| RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000107.Unknown.WBbt:0007833.PRJEB2965.ERX200395 | 60 | |||
| RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000108.Unknown.WBbt:0007833.PRJEB2965.ERX200391 | 53 | |||
| RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000108.Unknown.WBbt:0007833.PRJEB2965.ERX200392 | 19 | |||
| RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000108.Unknown.WBbt:0007833.PRJEB2965.ERX200393 | 21 | |||
| RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000110.Unknown.WBbt:0007833.PRJEB2965.ERX200396 | 117 | |||
| RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000110.Unknown.WBbt:0007833.PRJEB2965.ERX200397 | 24 | |||
| Remark | Defined by RNASeq data (example read: ERR225734.12193574.+.SL1 + 90M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000104.Male.WBbt:0007833.PRJEB2965.ERX200394 with 27 reads | |||
| Defined by RNASeq data (example read: ERR225735.27535524.+.SL1 + 92M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000107.Unknown.WBbt:0007833.PRJEB2965.ERX200395 with 60 reads | ||||
| Defined by RNASeq data (example read: ERR225731.23200056.+.SL1 + 91M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000108.Unknown.WBbt:0007833.PRJEB2965.ERX200391 with 53 reads | ||||
| Defined by RNASeq data (example read: ERR225732.31085078.+.SL1 + 92M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000108.Unknown.WBbt:0007833.PRJEB2965.ERX200392 with 19 reads | ||||
| Defined by RNASeq data (example read: ERR225733.32069881.+.SL1 + 92M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000108.Unknown.WBbt:0007833.PRJEB2965.ERX200393 with 21 reads | ||||
| Defined by RNASeq data (example read: ERR225736.20710000.+.SL1 + 91M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000110.Unknown.WBbt:0007833.PRJEB2965.ERX200396 with 117 reads | ||||
| Defined by RNASeq data (example read: ERR225737.22466290.+.SL1 + 92M) from RNASeq.ovolvulus.O_volvulus_Cameroon_isolate.WBls:0000110.Unknown.WBbt:0007833.PRJEB2965.ERX200397 with 24 reads | ||||
| Method | SL1 |
