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WormBase Tree Display for Gene: WBGene00008206

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Name Class

WBGene00008206SMapS_parentSequenceC49F5
IdentityVersion2
NameCGC_nameset-6Person_evidenceWBPerson1730
WBPerson268
WBPerson632
Sequence_nameC49F5.2
Molecular_nameC49F5.2
C49F5.2.1
CE31454
Other_nameCELE_C49F5.2Accession_evidenceNDBBX284606
Public_nameset-6
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
203 May 2007 10:33:07WBPerson2970Name_changeCGC_nameset-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classset
AlleleWBVar01621208
WBVar01191569
WBVar01191570
WBVar01191571
WBVar01499887
WBVar01191572
WBVar01499888
WBVar01191573
WBVar01191574
WBVar02124654
WBVar01499710
WBVar02151809
WBVar01471419
WBVar01471420
WBVar01471421
WBVar01471422
WBVar02124852
WBVar01981400
WBVar01487769
WBVar02140189
WBVar01495515
WBVar02145273
WBVar01690667
WBVar02144172
WBVar02121067
WBVar02122731
WBVar02122732
WBVar00083392
WBVar00083393
WBVar00083394
WBVar02034734
WBVar00518582
WBVar00518583
WBVar00518584
WBVar00518585
WBVar00518586
WBVar00093360
WBVar00518587
WBVar00518588
WBVar00518589
WBVar00518590
WBVar00250591
WBVar01191553
WBVar01191554
WBVar01191555
WBVar01191556
WBVar01191557
WBVar02122979
WBVar01191558
WBVar01825954
WBVar01191559
WBVar01191560
WBVar01191561
WBVar01191562
WBVar01191563
WBVar01191564
WBVar01498960
WBVar01621204
WBVar01191565
WBVar01191566
WBVar01621205
WBVar01191567
WBVar01621206
WBVar01500067
WBVar01621207
WBVar01191568
StrainWBStrain00027555
WBStrain00027556
WBStrain00037496
RNASeq_FPKM (74)
GO_annotation (13)
Ortholog (43)
Paralog (20)
Structured_descriptionConcise_descriptionset-6 encodes a putative histone H3 lysine-9 methyltransferase; SET-6 has no non-nematode orthologs, but several paralogs (SET-13, SET-15, SET-19, SET-20, SET-21, and SET-32); neither set-6(tm1611) nor set-6(RNAi) have any obvious phenotypes.Paper_evidenceWBPaper00030864
Curator_confirmedWBPerson567
Date_last_updated11 Oct 2007 00:00:00
Automated_descriptionEnables histone H3K9 dimethyltransferase activity and histone H3K9 trimethyltransferase activity. Involved in epigenetic regulation of gene expression. Part of chromatin. Expressed in embryonic cell; gonad; muscle cell; nervous system; and sperm. Is an ortholog of human SUV39H2 (SUV39H2 histone lysine methyltransferase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC49F5.2
Corresponding_CDS_historyC49F5.2:wp83
Corresponding_transcriptC49F5.2.1
Associated_featureWBsf654453
WBsf671066
WBsf1007148
WBsf1023954
WBsf238023
WBsf238024
WBsf238025
Experimental_infoRNAi_resultWBRNAi00042808Inferred_automaticallyRNAi_primary
WBRNAi00086719Inferred_automaticallyRNAi_primary
WBRNAi00012145Inferred_automaticallyRNAi_primary
WBRNAi00113440Inferred_automaticallyRNAi_primary
WBRNAi00091517Inferred_automaticallyRNAi_primary
Expr_patternExpr12975
Expr14375
Expr14975
Expr1021091
Expr1033565
Expr1146788
Expr2015782
Expr2034015
Drives_constructWBCnstr00033156
WBCnstr00041827
Construct_productWBCnstr00033156
WBCnstr00041827
Regulate_expr_clusterWBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
Microarray_results (17)
Expression_clusterWBPaper00032976:dosage_compensated_genes
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_embryo_enriched
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00044736:flat_dev_expression
WBPaper00045521:Oogenic
WBPaper00045774:clk-1_downregulated
WBPaper00045774:clk-1_downregulated_CoQ10_independent
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00046805:csr-1(RNAi)_downregulated_Set2
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_enriched
WBPaper00050990:hypodermis_expressed
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056826:SGP_biased
WBPaper00057254:MWCNT_downregulated_mRNA
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:utx-1_2886-swan-1_2192
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066085:sin-3(tm1276)_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_D
WBPaper00037695:WC_5-day
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00055899:nitroguanidine_regulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (13)
Map_infoMapXPosition6.83564Error0.016397
PositivePositive_cloneC49F5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026067
WBPaper00030864
WBPaper00036383
WBPaper00038372
WBPaper00039449
WBPaper00045125
WBPaper00059356
WBPaper00064543
WBPaper00065308
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene