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WormBase Tree Display for Gene: WBGene00005020

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Name Class

WBGene00005020EvidencePaper_evidenceWBPaper00005800
SMapS_parentSequenceY110A2AL
IdentityVersion1
NameCGC_namesqv-2Person_evidenceWBPerson268
Sequence_nameY110A2AL.14
Molecular_nameY110A2AL.14
Y110A2AL.14.1
CE25190
Other_nameCELE_Y110A2AL.14Accession_evidenceNDBBX284602
Public_namesqv-2
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
AlleleWBVar00090641
WBVar00090576
WBVar00168127
WBVar00168128
WBVar02089132
WBVar01499702
WBVar00168129
WBVar00168130
WBVar00168131
WBVar00168132
WBVar00360402
WBVar00168133
WBVar00360403
WBVar00168134
WBVar00360404
WBVar00168135
WBVar00360405
WBVar00360406
WBVar00168136
WBVar02035559
WBVar00715297
WBVar01934110
WBVar00168137
WBVar00715298
WBVar00168138
WBVar00168140
WBVar00715299
WBVar00715300
WBVar00715301
WBVar00715302
WBVar00715303
WBVar02072283
WBVar00715304
WBVar00715305
WBVar01898493
WBVar00715306
WBVar00715307
WBVar00715308
WBVar00715309
WBVar01576586
WBVar01576587
WBVar00715310
WBVar01576588
WBVar00715311
WBVar00715312
WBVar00715313
WBVar00715314
WBVar00715315
WBVar00715316
WBVar01412971
WBVar01412973
WBVar00715317
WBVar00715318
WBVar00715319
WBVar01546492
WBVar00715320
WBVar00715321
WBVar00715322
WBVar00715323
WBVar02084568
WBVar01500106
WBVar00100798
WBVar00215210
WBVar00100799
WBVar00215211
WBVar00100800
WBVar02028978
WBVar00215213
WBVar00090645
WBVar00100801
WBVar00090646
WBVar00100802
WBVar01695049
WBVar00100803
WBVar01695050
WBVar00100804
WBVar01943299
WBVar01503802
WBVar01503803
WBVar01234424
WBVar01234427
WBVar01234428
WBVar01790623
WBVar01790624
WBVar01234430
WBVar01234433
WBVar01790625
WBVar01234434
WBVar02086254
WBVar02108711
WBVar01915977
WBVar01243585
WBVar01910562
WBVar02073126
WBVar02117201
WBVar01625912
WBVar01365593
WBVar01959592
WBVar01959593
WBVar01959594
WBVar01393103
WBVar01300340
WBVar01393104
WBVar02079486
WBVar01300352
WBVar01365712
WBVar01365723
WBVar01365734
WBVar02068120
WBVar02049419
WBVar00547427
WBVar01765181
WBVar01765182
WBVar01765183
WBVar01765184
WBVar01765185
WBVar01765186
WBVar02106391
WBVar01536774
WBVar01536775
WBVar01536776
WBVar01536777
WBVar01536778
WBVar01404460
WBVar01404468
WBVar01718977
WBVar01718978
WBVar01718979
WBVar01718980
WBVar01718981
WBVar01894928
WBVar01718982
WBVar01894929
WBVar01718983
WBVar01718984
WBVar01718985
WBVar00090581
Legacy_information[Herman T] sqv for squashed vulva. morphology of L4 vulva abnormal (invagination considerably reduced). hermaphrodites self-sterile. n2826, n2821 somewhat fertile.
[C.elegansII] n2826 : morphology of L4 vulva abnormal (invagination considerably reduced); hermaphrodites self-sterile. OA4: n2821 (somewhat fertile), n3037, n3038,n2826, n2821. [MT]
StrainWBStrain00027289
RNASeq_FPKM (74)
GO_annotation (24)
Contained_in_operonCEOP2072
CEOP2074
Ortholog (31)
Paralog (18)
Structured_descriptionConcise_descriptionsqv-2 encodes a glycosaminoglycan galactosyltransferase II, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; the common requirement for SQV-2 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.Paper_evidenceWBPaper00003405
WBPaper00004509
WBPaper00005800
WBPaper00005867
WBPaper00005868
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables galactosylxylosylprotein 3-beta-galactosyltransferase activity. Involved in several processes, including egg-laying behavior; glycosaminoglycan biosynthetic process; and vulval development. Located in Golgi apparatus. Expressed in intestine. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome spondylodysplastic type 2 and spondyloepimetaphyseal dysplasia with joint laxity type 1. Is an ortholog of human B3GALT6 (beta-1,3-galactosyltransferase 6).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0112198Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17978)
DOID:0050802Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17978)
Molecular_infoCorresponding_CDSY110A2AL.14
Corresponding_transcriptY110A2AL.14.1
Other_sequence (29)
Associated_featureWBsf665414
WBsf981169
WBsf987093
WBsf987094
WBsf222812
Experimental_infoRNAi_resultWBRNAi00115278Inferred_automaticallyRNAi_primary
WBRNAi00061137Inferred_automaticallyRNAi_primary
WBRNAi00055298Inferred_automaticallyRNAi_primary
WBRNAi00019855Inferred_automaticallyRNAi_primary
WBRNAi00082826Inferred_automaticallyRNAi_primary
WBRNAi00001214Inferred_automaticallyRNAi_primary
WBRNAi00061138Inferred_automaticallyRNAi_primary
WBRNAi00036540Inferred_automaticallyRNAi_primary
Expr_patternExpr3521
Expr3522
Expr1022923
Expr1032503
Expr1158835
Expr2016120
Expr2034355
Drives_constructWBCnstr00011447
Construct_productWBCnstr00011447
AntibodyWBAntibody00000873
Microarray_results (19)
Expression_cluster (95)
InteractionWBInteraction000134117
Map_infoMapIIPosition-9.48977Error0.058265
PositivePositive_cloneY110A2ALInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point3136
3137
4329
Reference (15)
MethodGene