WormBase Tree Display for Gene: WBGene00004786
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WBGene00004786 | Evidence | Paper_evidence | WBPaper00003081 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPaper00003416 | |||||||||
SMap | S_parent | Sequence | F44A6 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | sex-1 | Person_evidence | WBPerson421 | |||||
Sequence_name | F44A6.2 | ||||||||
Molecular_name | F44A6.2 | ||||||||
F44A6.2.1 | |||||||||
CE03323 | |||||||||
Other_name | nhr-24 | ||||||||
cnr14 | Accession_evidence | EMBL | U13074 | ||||||
CELE_F44A6.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | sex-1 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00004786 | |||||
WormFlux | gene | WBGene00004786 | |||||||
NDB | locus_tag | CELE_F44A6.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004786|UniProtKB=P41830 | |||||||
family | PTHR24082 | ||||||||
NCBI | gene | 181231 | |||||||
RefSeq | protein | NM_001029491.5 | |||||||
SwissProt | UniProtAcc | P41830 | |||||||
TREEFAM | TREEFAM_ID | TF352096 | |||||||
UniProt_GCRP | UniProtAcc | P41830 | |||||||
OMIM | gene | 180220 | |||||||
180240 | |||||||||
601487 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sex | ||||||||
Allele | WBVar02032854 | ||||||||
WBVar00514613 | |||||||||
WBVar01179434 | |||||||||
WBVar00514614 | |||||||||
WBVar00514615 | |||||||||
WBVar01179435 | |||||||||
WBVar00082216 | |||||||||
WBVar00514616 | |||||||||
WBVar01179436 | |||||||||
WBVar00514617 | |||||||||
WBVar01179437 | |||||||||
WBVar00053802 | |||||||||
WBVar00514618 | |||||||||
WBVar01179438 | |||||||||
WBVar00514619 | |||||||||
WBVar01179439 | |||||||||
WBVar00514620 | |||||||||
WBVar01179440 | |||||||||
WBVar00514621 | |||||||||
WBVar01179441 | |||||||||
WBVar00514622 | |||||||||
WBVar01179442 | |||||||||
WBVar01179443 | |||||||||
WBVar01179444 | |||||||||
WBVar00093258 | |||||||||
WBVar01179445 | |||||||||
WBVar01179446 | |||||||||
WBVar01179447 | |||||||||
WBVar01179448 | |||||||||
WBVar01179449 | |||||||||
WBVar01179450 | |||||||||
WBVar01179451 | |||||||||
WBVar01179452 | |||||||||
WBVar01179453 | |||||||||
WBVar01179454 | |||||||||
WBVar01179455 | |||||||||
WBVar01179456 | |||||||||
WBVar01179457 | |||||||||
WBVar01888486 | |||||||||
WBVar01179458 | |||||||||
WBVar01888487 | |||||||||
WBVar01179459 | |||||||||
WBVar01179460 | |||||||||
WBVar01888488 | |||||||||
WBVar01888489 | |||||||||
WBVar02027304 | |||||||||
WBVar00276568 | |||||||||
WBVar00275342 | |||||||||
WBVar01759055 | |||||||||
WBVar00275351 | |||||||||
WBVar01703407 | |||||||||
WBVar00062334 | |||||||||
WBVar00062339 | |||||||||
WBVar00062344 | |||||||||
WBVar00146114 | |||||||||
WBVar02151526 | |||||||||
WBVar00260121 | |||||||||
WBVar00146132 | |||||||||
WBVar00146321 | |||||||||
WBVar01620235 | |||||||||
WBVar01470731 | |||||||||
WBVar01470732 | |||||||||
WBVar01494905 | |||||||||
WBVar01928058 | |||||||||
WBVar01498960 | |||||||||
WBVar01500067 | |||||||||
Legacy_information | sex-1 for Signal Element on X. sex-1 hermaphrodites are Dpy, Egl and Tra, males are wild type. Encodes predicted nuclear hormone receptor, gene F44A6.2,published as CNR14 by Kostrouch et al. (1995), aka nhr-24 | ||||||||
Strain | WBStrain00028733 | ||||||||
WBStrain00035136 | |||||||||
WBStrain00036740 | |||||||||
WBStrain00036791 | |||||||||
WBStrain00036806 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (28) | |||||||||
Ortholog (56) | |||||||||
Paralog (217) | |||||||||
Structured_description | Concise_description | sex-1 encodes a DNA-binding protein that is a member of the nuclear hormone receptor superfamily of transcriptional regulators; during embryonic development, SEX-1 functions as an X chromosome signal element that transmits the primary sex-determination signal by negatively regulating transcription of xol-1, a gene whose expression levels correlate with hermaphrodite or male development (low xol-1 levels result in hermaphrodite development, high xol-1, in that of males); in vivo, SEX-1 can associate with extrachromosomal arrays containing the xol-1 promoter, indicating that SEX-1's affect on xol-1 transcription is likely to be direct; SEX-1 localizes to nuclei from oogenesis through mid-embryogenesis, with highest levels of expression visible during early gastrulation (28-100-cell-stage); the SEX-1 expression pattern appears to be similar in hermaphrodites and males. | Paper_evidence | WBPaper00003262 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Oct 2005 00:00:00 | ||||||||
Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in primary sex determination and regulation of gene expression. Located in nucleus. Expressed in gonad; intestine; oocyte; and ventral uterine precursor. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; artery disease (multiple); liver disease (multiple); and lung carcinoma (multiple). Is an ortholog of human NR1D1 (nuclear receptor subfamily 1 group D member 1) and NR1D2 (nuclear receptor subfamily 1 group D member 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0070204 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||
DOID:0081120 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:10591 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:1561 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:10763 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:0111800 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9865) | ||||||
DOID:3324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9864) | ||||||
DOID:14018 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7962) | ||||||
DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9865) | ||||||
DOID:9970 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:1287 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:5409 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9865) | ||||||
DOID:3407 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9865) | ||||||
DOID:219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:7596 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9865) | ||||||
DOID:0060318 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9864) | ||||||
DOID:783 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:3587 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:13207 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:811 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:3393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9236) | ||||||
DOID:0112313 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7962) | ||||||
Molecular_info | Corresponding_CDS | F44A6.2 | |||||||
Corresponding_CDS_history | F44A6.2a:wp144 | ||||||||
F44A6.2b:wp144 | |||||||||
Corresponding_transcript | F44A6.2.1 | ||||||||
Other_sequence | U13074 | ||||||||
JI175482.1 | |||||||||
EF066631.1 | |||||||||
CR04735 | |||||||||
AF367207.1 | |||||||||
JI168358.1 | |||||||||
CRC05784_1 | |||||||||
Associated_feature (21) | |||||||||
Transcription_factor | WBTranscriptionFactor000302 | ||||||||
Experimental_info | RNAi_result (40) | ||||||||
Expr_pattern | Expr1581 | ||||||||
Expr7557 | |||||||||
Expr8032 | |||||||||
Expr15144 | |||||||||
Expr1016094 | |||||||||
Expr1032373 | |||||||||
Expr1151099 | |||||||||
Expr1200128 | |||||||||
Expr2015785 | |||||||||
Expr2034018 | |||||||||
Drives_construct | WBCnstr00012702 | ||||||||
WBCnstr00035389 | |||||||||
Construct_product | WBCnstr00016585 | ||||||||
WBCnstr00016774 | |||||||||
WBCnstr00035389 | |||||||||
Antibody | WBAntibody00000976 | ||||||||
Microarray_results (25) | |||||||||
Expression_cluster (193) | |||||||||
Interaction (105) | |||||||||
WBProcess | WBbiopr:00000056 | ||||||||
Map_info | Map | X | Position | 1.8824 | Error | 0.018071 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | stDp2 | |||||||
Positive_clone | C06F4 | ||||||||
F44A6 | Person_evidence | WBPerson600 | |||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point | 4909 | |||||||
Pos_neg_data | 9151 | ||||||||
Reference (65) | |||||||||
Remark | nhr-24 is predicted gene F44A6.2, pka cnr-14 | ||||||||
sex-1 designation takes precedence, nhr-24 retired [021217 ck1] | |||||||||
Method | Gene |