WormBase Tree Display for Gene: WBGene00013011

WBGene00013011 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: snx-14 Person_evidence: WBPerson260
      Sequence_name: Y48E1B.14
      Molecular_name: Y48E1B.14
        Y48E1B.14.1
        CE33876
      Other_name: CELE_Y48E1B.14 Accession_evidence: NDB BX284602
      Public_name: snx-14
    DB_info: Database: AceView gene 2N814
        WormQTL gene WBGene00013011
        WormFlux gene WBGene00013011
        NDB locus_tag CELE_Y48E1B.14
        Panther gene CAEEL|WormBase=WBGene00013011|UniProtKB=G5EF63
          family PTHR22775
        NCBI gene 174997
        RefSeq protein NM_064443.6
        TrEMBL UniProtAcc G5EF63
        UniProt_GCRP UniProtAcc G5EF63
        OMIM gene 616105
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Apr 2012 16:15:57 WBPerson2970 Name_change: CGC_name: snx-14
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snx
    Allele: WBVar00312402
      WBVar00312404
      WBVar00312405
      WBVar01499702
      WBVar00312406
      WBVar00312407
      WBVar01539767
      WBVar01539768
      WBVar01441619
      WBVar01539769
      WBVar01852158
      WBVar00277811
      WBVar01382102
      WBVar01382105
      WBVar01406571
      WBVar01382108
      WBVar01382110
      WBVar01498435
      WBVar00555731
      WBVar00555732
      WBVar00555733
      WBVar00555737
      WBVar02120814
      WBVar01960841
      WBVar00238944
      WBVar02096711
      WBVar01950028
      WBVar01950029
      WBVar01950030
      WBVar01478402
      WBVar02014482
      WBVar01498828
      WBVar02014483
      WBVar01478403
      WBVar01498829
      WBVar01478404
      WBVar01478405
      WBVar02120650
      WBVar02120651
      WBVar01642696
      WBVar01936784
      WBVar01642697
      WBVar00231374
      WBVar00231376
      WBVar00231378
      WBVar01317184
      WBVar01317188
      WBVar01317189
      WBVar01317190
      WBVar01389490
      WBVar00782853
      WBVar00782854
      WBVar00782855
      WBVar00782856
      WBVar00782857
      WBVar00782858
      WBVar00782859
      WBVar00782860
      WBVar00782861
      WBVar00782862
      WBVar01562153
      WBVar00782863
      WBVar01562154
      WBVar00782864
      WBVar01250497
      WBVar01562155
      WBVar01250500
      WBVar00782865
      WBVar01562156
      WBVar00782866
      WBVar01250503
      WBVar00007853
      WBVar00782867
      WBVar01250504
      WBVar00782868
      WBVar01250505
      WBVar00007858
      WBVar00782869
      WBVar01250507
      WBVar01263262
      WBVar00782870
      WBVar00782871
      WBVar00782872
      WBVar00007863
      WBVar00782873
      WBVar00782874
      WBVar00782875
      WBVar00007868
      WBVar00782876
      WBVar00782877
      WBVar00007873
      WBVar00782878
      WBVar00782879
      WBVar00782880
      WBVar00782881
      WBVar00007878
      WBVar01499110
      WBVar00782882
      WBVar01705871
      WBVar01499111
      WBVar00782883
      WBVar00007883
      WBVar00782884
      WBVar02085046
      WBVar00782885
      WBVar00782886
      WBVar00782887
      WBVar00007888
      WBVar00782888
      WBVar00782889
      WBVar00782890
      WBVar00007893
      WBVar00782891
      WBVar00782892
      WBVar00782893
      WBVar00782894
      WBVar00383003
      WBVar00782895
      WBVar00383004
      WBVar00782896
      WBVar00255206
      WBVar01498941
      WBVar00782897
      WBVar00383005
      WBVar00106622
      WBVar00782898
      WBVar00383006
      WBVar00106624
      WBVar00383007
      WBVar00782899
      WBVar00383008
      WBVar00383009
      WBVar00383010
      WBVar00383011
      WBVar00383012
      WBVar01500052
      WBVar00383013
      WBVar00383014
      WBVar00383015
      WBVar00383016
      WBVar00383017
      WBVar00383018
      WBVar02087649
      WBVar00383019
      WBVar00383020
      WBVar02087650
      WBVar02087651
      WBVar00312399
      WBVar00312400
      WBVar00312401
    RNASeq_FPKM (74)
    GO_annotation: 00017502
      00017503
      00017504
      00017505
      00119981
    Contained_in_operon: CEOP2616
    Ortholog (35)
    Paralog: WBGene00013803 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in autophagosome maturation. Predicted to be located in late endosome. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 20. Is an ortholog of human SNX14 (sorting nexin 14). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080066 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14977)
  Molecular_info: Corresponding_CDS: Y48E1B.14
    Corresponding_CDS_history: Y48E1B.14:wp61
      Y48E1B.14:wp92
      Y48E1B.14a:wp99
      Y48E1B.14b:wp279
    Corresponding_transcript: Y48E1B.14.1
    Other_sequence (17)
    Associated_feature: WBsf666322
      WBsf666323
      WBsf990448
      WBsf990449
      WBsf990450
      WBsf1013655
      WBsf1013656
      WBsf224180
      WBsf224181
      WBsf224182
  Experimental_info: RNAi_result: WBRNAi00002211 Inferred_automatically: RNAi_primary
      WBRNAi00087658 Inferred_automatically: RNAi_primary
      WBRNAi00085783 Inferred_automatically: RNAi_primary
      WBRNAi00098084 Inferred_automatically: RNAi_primary
      WBRNAi00097737 Inferred_automatically: RNAi_primary
      WBRNAi00056915 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017977
      Expr1035780
      Expr1160362
      Expr2015985
      Expr2034220
    Microarray_results (29)
    Expression_cluster (108)
  Map_info: Map: II Position: 17.8962
    Positive: Positive_clone: Y48E1B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031805
    WBPaper00038491
    WBPaper00055090
    WBPaper00061460
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene