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WormBase Tree Display for Gene: WBGene00003100

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Name Class

WBGene00003100SMapS_parentSequenceY53C12B
IdentityVersion1
NameCGC_namemab-3Person_evidenceWBPerson261
Sequence_nameY53C12B.5
Molecular_nameY53C12B.5a
Y53C12B.5a.1
CE14902
Y53C12B.5b
CE51560
Y53C12B.5b.1
Y53C12B.5b.2
Other_nameCELE_Y53C12B.5Accession_evidenceNDBBX284602
Public_namemab-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_info (11)
Molecular_infoCorresponding_CDSY53C12B.5a
Y53C12B.5b
Corresponding_CDS_historyY53C12B.5b:wp253
Corresponding_transcriptY53C12B.5a.1
Y53C12B.5b.1
Y53C12B.5b.2
Other_sequenceDviv_isotig08806
Dviv_isotig08805
Oden_isotig19447
Associated_feature (16)
Gene_product_bindsWBsf977964
Transcription_factorWBTranscriptionFactor000032
Experimental_infoRNAi_resultWBRNAi00020914Inferred_automaticallyRNAi_primary
WBRNAi00057258Inferred_automaticallyRNAi_primary
WBRNAi00027798Inferred_automaticallyRNAi_primary
Expr_patternExpr950
Expr3376
Expr14651
Expr1023078
Expr1160695
Expr2013327
Expr2031559
Drives_constructWBCnstr00000514
WBCnstr00013819
WBCnstr00036229
Construct_productWBCnstr00007577
WBCnstr00013819
WBCnstr00036229
Microarray_results (28)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042165:let-7_downregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045390:tunicamycin_upregulated
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Spermatogenic
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00048611:MnCl2_upregulated
WBPaper00048988:daf-16(mu86)_upregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049377:MWCNT_upregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050231:male_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050717:let-7(n2853)_lin-41(xe11)_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00054410:set-9(rw5)_downregulated
WBPaper00054410:set-26(tm2467)_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056167:Cry5B_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1_upregulated_L4_transcript
WBPaper00056617:adr-2_upregulated_L4_transcript
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059471:EGL-43_interacting
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060871:M.humicola-extract_1h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060921:cat-2(e1112)_downregulated
WBPaper00061106:endu-2(tm4977)_upregulated
WBPaper00061340:BWM_far_posterior
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:C36C5.12-F57G8.7
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_8h_upregulated_mRNA
WBPaper00064532:pals-25(icb98)_downregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065258:anchor-cell_depleted
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065841:7_4
WBPaper00065841:30_0
WBPaper00065841:30_2
WBPaper00065841:30_5
WBPaper00065841:34_0
WBPaper00065841:64_0
WBPaper00065841:141_0
WBPaper00065841:143_0
WBPaper00065841:145_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_18
WBPaper00026629:L4_male_enriched
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00031252:AIN-1_IP_enriched
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_G
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
Interaction (131)
Map_infoMapIIPosition1.70477Error0.004625
Well_ordered
PositiveInside_rearreDf21
Positive_cloneY53C12BInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point337
Multi_point206
1059
4543
Pos_neg_data (16)
ReferenceWBPaper00000608
WBPaper00001013
WBPaper00001028
WBPaper00001057
WBPaper00001076
WBPaper00001206
WBPaper00001242
WBPaper00001442
WBPaper00001513
WBPaper00001523
WBPaper00001554
WBPaper00001559
WBPaper00001683
WBPaper00001720
WBPaper00001790
WBPaper00001853
WBPaper00001972
WBPaper00003000
WBPaper00003213
WBPaper00003298
WBPaper00003418
WBPaper00003452
WBPaper00004324
WBPaper00004489
WBPaper00005463
WBPaper00005617
WBPaper00005643
WBPaper00005922
WBPaper00005923
WBPaper00006271
WBPaper00006390
WBPaper00006448
WBPaper00010536
WBPaper00012367
WBPaper00012447
WBPaper00012448
WBPaper00012498
WBPaper00012652
WBPaper00012723
WBPaper00012749
WBPaper00013054
WBPaper00013704
WBPaper00013709
WBPaper00013780
WBPaper00013910
WBPaper00014067
WBPaper00014514
WBPaper00014922
WBPaper00015487
WBPaper00015552
WBPaper00016427
WBPaper00016477
WBPaper00016504
WBPaper00016592
WBPaper00018400
WBPaper00018450
WBPaper00018976
WBPaper00019569
WBPaper00019625
WBPaper00020940
WBPaper00020991
WBPaper00022154
WBPaper00022653
WBPaper00022979
WBPaper00023847
WBPaper00024494
WBPaper00024999
WBPaper00025000
WBPaper00025236
WBPaper00025742
WBPaper00026629
WBPaper00027248
WBPaper00027262
WBPaper00027272
WBPaper00027278
WBPaper00027294
WBPaper00027297
WBPaper00027309
WBPaper00027989
WBPaper00028124
WBPaper00030834
WBPaper00031953
WBPaper00032054
WBPaper00032414
WBPaper00034176
WBPaper00034349
WBPaper00034420
WBPaper00036294
WBPaper00037195
WBPaper00037373
WBPaper00037390
WBPaper00038232
WBPaper00038812
WBPaper00038875
WBPaper00039688
WBPaper00043476
WBPaper00043724
WBPaper00045411
WBPaper00047531
WBPaper00048275
WBPaper00049295
WBPaper00049345
WBPaper00050717
WBPaper00052215
WBPaper00052554
WBPaper00053834
WBPaper00055090
WBPaper00055155
WBPaper00056121
WBPaper00056453
WBPaper00057254
WBPaper00058268
WBPaper00058742
WBPaper00063715
WBPaper00064354
WBPaper00064718
WBPaper00065979
WBPaper00066158
Remarksequence link from jah 980604
(a) removed from sequence. only .5 in sequence list. [sdm 05/00]
MethodGene