WormBase Tree Display for Gene: WBGene00001901

WBGene00001901 SMap: S_parent: Sequence: K06C4
  Identity: Version: 1
    Name: CGC_name: his-27 Person_evidence: WBPerson160
      Sequence_name: K06C4.13
      Molecular_name: K06C4.13
        K06C4.13.1
        CE03253
      Other_name: CELE_K06C4.13 Accession_evidence: NDB BX284605
      Public_name: his-27
    DB_info: Database: AceView gene 5J371
        WormFlux gene WBGene00001901
        NDB locus_tag CELE_K06C4.13
        NCBI gene 246024
        RefSeq protein NM_072891.1
        SwissProt UniProtAcc P08898
        UniProt_GCRP UniProtAcc P08898
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: his
    Allele: WBVar01499903
      WBVar01500129
      WBVar01499419
      WBVar01499420
      WBVar01499056
      WBVar01499316
    In_cluster: HIS4_cluster
    RNASeq_FPKM (74)
    GO_annotation: 00109624
      00109625
      00109626
      00109627
    Ortholog (144)
    Paralog (22)
    Structured_description: Concise_description: his-27 encodes an H3 histone; by homology, HIS-27 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-27 is a replication-dependent histone locus that resides in the HIS4 cluster on chromosome V. Paper_evidence: WBPaper00005142
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of several human genes including H3C1 (H3 clustered histone 1); H3C3 (H3 clustered histone 3); and H3C4 (H3 clustered histone 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K06C4.13
    Corresponding_transcript: K06C4.13.1
    Other_sequence: BUC00182_1
      TSC01301_1
      AS07191
      ASC20945_1
      TS03212
      PPC02979_1
      Hbac_isotig01018
      EX012162.1
  Experimental_info: RNAi_result: WBRNAi00090829 Inferred_automatically: RNAi_primary
      WBRNAi00025512 Inferred_automatically: RNAi_primary
      WBRNAi00025853 Inferred_automatically: RNAi_primary
      WBRNAi00081663 Inferred_automatically: RNAi_primary
      WBRNAi00095670 Inferred_automatically: RNAi_primary
      WBRNAi00111729 Inferred_automatically: RNAi_primary
      WBRNAi00047424 Inferred_automatically: RNAi_primary
      WBRNAi00053027 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1153753
    Drives_construct: WBCnstr00036613
    Construct_product: WBCnstr00036613
    Microarray_results: 172647_x_at
      172867_x_at
    Expression_cluster: WBPaper00038289:oocyte_protein
      WBPaper00044760:somatic_specific
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049905:Age_variant_expression
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050599:nicotine(1mM)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051021:4-bromodiphenyl-ether_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00055013:HMG-3_interacting_protein
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00059605:mut-16(pk710)_downregulated
      WBPaper00060908:TEBP-1_interacting
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00062056:dpl-1(n2994)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00064201:SNA-1_interacting
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00025032:cluster_145
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00034739:N2lessDR1350
      WBPaper00035905:FBF-1_Associated
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037695:WC_5-day
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_N2
    Interaction (179)
  Map_info: Map: V Position: 1.67117
    Positive: Positive_clone: K06C4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005142
    WBPaper00005182
    WBPaper00038491
    WBPaper00040135
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene