WormBase Tree Display for Gene: WBGene00003341

WBGene00003341 Evidence: Paper_evidence: WBPaper00005825
  SMap: S_parent: Sequence: C39E6
  Identity: Version: 1
    Name: CGC_name: mir-247 Person_evidence: WBPerson18
      Sequence_name: C39E6.7
      Molecular_name: C39E6.7
        C39E6.7a
        C39E6.7b
      Other_name: cel-mir-247 Remark: miRBase V21 import
        Cel-Mir-279-o10 Remark: MirGeneDB 2.1 import
        CELE_C39E6.7 Accession_evidence: NDB BX284606
      Public_name: mir-247
    DB_info: Database: miRBase acc MI0000323
        SignaLink mirna cel-mir-247
        MirGeneDB cel Cel-Mir-279-o10
        NDB locus_tag CELE_C39E6.7
        NCBI gene 3565194
        RefSeq protein NR_002419.2
        RNAcentral URSid URS0000030B6C
            URS000012E02D
            URS000034CF86
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:31 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001265
    Gene_class: mir
    Allele: WBVar00090851
      WBVar01499756
      WBVar01499757
      WBVar01142667
      WBVar02015530
      WBVar01498929
      WBVar01500236
      WBVar01500067
    Strain (4)
    In_cluster: MIR-279
    RNASeq_FPKM (74)
    Structured_description: Concise_description: mir-247 encodes a microRNA, a small non-protein coding RNA; mir-247 is weakly expressed at the L3 larval stage; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-247 is unknown. Paper_evidence: WBPaper00005825
          Curator_confirmed: WBPerson324
          Date_last_updated: 24 Feb 2005 00:00:00
      Automated_description: Expressed in neurons and seam cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_transcript: C39E6.7
      C39E6.7a
      C39E6.7b
    Associated_feature: WBsf979145
      WBsf1005059
    Gene_product_binds: WBsf047547
  Experimental_info: Expr_pattern: Expr2542
      Expr8430
      Expr8596
      Expr10894
    Drives_construct: WBCnstr00005545
      WBCnstr00013389
    Expression_cluster: WBPaper00045209:graphene-oxide_upregulated
      WBPaper00045316:miRNA_N2_L2_vs_L1_upregulated_adult
      WBPaper00045316:miRNA_N2_L3_vs_L2_upregulated_adult
      WBPaper00045316:miRNA_N2_L4_vs_L3_downregulated_adult
      WBPaper00045316:miRNA_prg-1_downregulated_adult
      WBPaper00045316:miRNA_prg-1_downregulated_embryo
      WBPaper00045316:miRNA_prg-1_downregulated_L2
      WBPaper00045316:miRNA_prg-1_downregulated_L3
      WBPaper00045316:miRNA_prg-1_L3_vs_L2_upregulated_adult
      WBPaper00046303:P.aeruginosa_upregulated_miRNA
      WBPaper00051404:alg-1(gk214)_downregulated_miRNA
      WBPaper00051404:alg-1(gk214)_upregulated_miRNA
      WBPaper00051404:alg-2(ok304)_downregulated_miRNA
      WBPaper00051404:alg-2(ok304)_upregulated_miRNA
      WBPaper00051404:alg-5(ram2)_downregulated_miRNA
      WBPaper00051404:alg-5(ram2)_upregulated_miRNA
      WBPaper00051404:alg-5(tm1163)_downregulated_miRNA
      WBPaper00051404:alg-5(tm1163)_upregulated_miRNA
      WBPaper00053318:mir-71(n4115)_upregulated_miRNA
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057154:HeatShock_upregulated_miRNA
      WBPaper00058673:hrpk-1(tm5522)_downregulated_miRNA_L4
    Interaction: WBInteraction000542491
  Map_info: Map: X Position: -6.72614 Error: 0.005779
    Positive: Positive_clone: C39E6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005825
    WBPaper00031335
    WBPaper00032329
    WBPaper00032927
    WBPaper00035664
    WBPaper00052464
    WBPaper00056592
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene