WormBase Tree Display for Gene: WBGene00003348
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WBGene00003348 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK455 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-254 | Person_evidence | WBPerson18 | |||||
Sequence_name | ZK455.9 | ||||||||
Molecular_name | ZK455.9 | ||||||||
ZK455.9a | |||||||||
ZK455.9b | |||||||||
Other_name | cel-mir-254 | Remark | miRBase V21 import | ||||||
MirGeneDB 2.1 import | |||||||||
CELE_ZK455.9 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | mir-254 | ||||||||
DB_info | Database | miRBase | acc | MI0000330 | |||||
MirGeneDB | cel | Cel-Mir-254 | |||||||
NDB | locus_tag | CELE_ZK455.9 | |||||||
NCBI | gene | 3565332 | |||||||
RefSeq | protein | NR_002432.2 | |||||||
RNAcentral | URSid | URS00002CD657 | |||||||
URS000077BC1B | |||||||||
URS000077CB44 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele (14) | |||||||||
Strain | WBStrain00027466 | ||||||||
WBStrain00027560 | |||||||||
In_cluster | MIR-254 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-254 encodes a microRNA, a small non-protein coding RNA and has a potential ortholog in the nematode C. brigssae; based on RNA sequence identity mir-254 is included in the mir-19 family of microRNAs with human microRNAs: mir-19a, mir-19b-1 and mir-19b-2; as mir-254 could not be detected on northern blots, its expression profile is unknown; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-254 is unknown. | Paper_evidence | WBPaper00005825 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 25 Feb 2005 00:00:00 | ||||||||
Automated_description | Is affected by several genes including eat-2; prg-1; and alg-1 based on RNA-seq studies. Is affected by nicotine and sanguinarine based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | ZK455.9 | |||||||
ZK455.9a | |||||||||
ZK455.9b | |||||||||
Experimental_info | Expr_pattern | Expr2595 | |||||||
Expr10962 | |||||||||
Expression_cluster | WBPaper00045316:miRNA_N2_L1_vs_embryo_downregulated_adult | ||||||||
WBPaper00045316:miRNA_N2_L2_vs_L1_upregulated_adult | |||||||||
WBPaper00045316:miRNA_N2_L3_vs_L2_downregulated_adult | |||||||||
WBPaper00045316:miRNA_prg-1_upregulated_L1 | |||||||||
WBPaper00045316:miRNA_prg-1_upregulated_L3 | |||||||||
WBPaper00045316:miRNA_prg-1_upregulated_L4 | |||||||||
WBPaper00046156:eat-2(ad1116)_Day1_upregulated | |||||||||
WBPaper00046156:eat-2(ad1116)_Day8_downregulated | |||||||||
WBPaper00049006:nicotine_upregulated_F1 | |||||||||
WBPaper00050386:C.albicans_4h_upregulated | |||||||||
WBPaper00051404:alg-1(gk214)_downregulated_miRNA | |||||||||
WBPaper00051404:alg-2(ok304)_upregulated_miRNA | |||||||||
WBPaper00051404:alg-5(ram2)_upregulated_miRNA | |||||||||
WBPaper00051404:alg-5(tm1163)_downregulated_miRNA | |||||||||
WBPaper00053318:mir-71(n4115)_upregulated_miRNA | |||||||||
WBPaper00055663:sanguinarine_upregulated | |||||||||
WBPaper00056868:P.aeruginosa_upregulated_smallRNA | |||||||||
WBPaper00058673:hrpk-1(tm5522)_downregulated_miRNA_L4 | |||||||||
Interaction | WBInteraction000523988 | ||||||||
Map_info | Map | X | Position | 2.98486 | Error | 0.004648 | |||
Positive | Positive_clone | ZK455 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005825 | ||||||||
WBPaper00031335 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |