WormBase Tree Display for Gene: WBGene00003836

WBGene00003836 Evidence: Accession_evidence: EMBL AF156960
  SMap: S_parent: Sequence: Y71F9AM
  Identity: Version: 1
    Name: CGC_name: nxt-1
      Sequence_name: Y71F9AM.5
      Molecular_name: Y71F9AM.5a
        Y71F9AM.5a.1
        CE26780
        Y71F9AM.5b
        CE41072
        Y71F9AM.5b.1
      Other_name: NXT1 Accession_evidence: EMBL AF156960
        CELE_Y71F9AM.5 Accession_evidence: NDB BX284601
      Public_name: nxt-1
    DB_info: Database: WormQTL gene WBGene00003836
        WormFlux gene WBGene00003836
        NDB locus_tag CELE_Y71F9AM.5
        Panther gene CAEEL|WormBase=WBGene00003836|UniProtKB=Q9U757
          family PTHR12612
        NCBI gene 171866
        RefSeq protein NM_058676.6
            NM_001129079.3
        SwissProt UniProtAcc Q9U757
        TREEFAM TREEFAM_ID TF318944
        TrEMBL UniProtAcc G8JYG1
        UniProt_GCRP UniProtAcc Q9U757
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nxt
    Allele (39)
    Possibly_affected_by: WBVar02158631
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP1076
    Ortholog (33)
    Paralog: WBGene00004305 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nuclear pore central transport channel. Is an ortholog of human NXT1 (nuclear transport factor 2 like export factor 1) and NXT2 (nuclear transport factor 2 like export factor 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71F9AM.5a
      Y71F9AM.5b
    Corresponding_CDS_history: Y71F9AM.5:wp175
    Corresponding_transcript: Y71F9AM.5a.1
      Y71F9AM.5b.1
    Other_sequence: CBC00607_1
      HBC08563_1
      ES410216.1
      CR04970
      PPC01131_1
      Tcir_isotig16706
      Tcir_isotig14299
      CRC08336_1
      Tcir_isotig11522
    Associated_feature: WBsf643123
      WBsf217353
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1024021
      Expr1031809
      Expr1161585
      Expr2014536
      Expr2032775
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00052987:UV_upregulated_xpc-1;csb-1
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057288:Cold_downregulated_protein
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061340:GLR
      WBPaper00061340:hmc_and_homolog
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:F54E7.8-orc-5_6376
      WBPaper00062143:PQN-59_interacting
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00063930:BRD-1_interacting
      WBPaper00064071:NHR-49_interacting
      WBPaper00064201:SNA-3_interacting
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064992:Capsaicin_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4489_group_4
      WBPaper00025032:cluster_26
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031003:hlh_1_enriched
      WBPaper00031060:2-deoxy-D-glucose_upregulated
      WBPaper00032948:FedUp
      WBPaper00036286:Pattern_F
      WBPaper00041939:control_vs_EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(186_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (13)
  Map_info: Map: I Position: -5.28307 Error: 0.002879
    Positive: Positive_clone: Y71F9AM Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040491
    WBPaper00055090
    WBPaper00063416
    WBPaper00065780
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene