WormBase Tree Display for Gene: WBGene00003859

WBGene00003859 SMap: S_parent: Sequence: C09E7
  Identity: Version: 1
    Name: CGC_name: oig-1 Person_evidence: WBPerson260
      Sequence_name: C09E7.3
      Molecular_name: C09E7.3
        C09E7.3.1
        CE23536
      Other_name: C09E7.f Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_C09E7.3 Accession_evidence: NDB BX284603
      Public_name: oig-1
    DB_info: Database: AceView gene 3H612
        WormQTL gene WBGene00003859
        WormFlux gene WBGene00003859
        NDB locus_tag CELE_C09E7.3
        NCBI gene 182450
        RefSeq protein NM_066038.3
        SwissProt UniProtAcc Q9N5Z2
        UniProt_GCRP UniProtAcc Q9N5Z2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: oig
    Allele (28)
    Strain: WBStrain00002148
      WBStrain00036436
      WBStrain00037716
      WBStrain00047363
      WBStrain00047365
    RNASeq_FPKM (74)
    GO_annotation: 00095690
      00095691
      00095692
      00095693
      00095694
      00095695
      00095696
      00095697
    Ortholog (15)
    Paralog: WBGene00043050 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in nervous system development. Predicted to be located in extracellular region; membrane; and neuron projection. Expressed in neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C09E7.3
    Corresponding_transcript: C09E7.3.1
    Other_sequence: CRC10323_1
      ACC16026_1
      CR05554
      Name_isotig02563
      Acan_isotig16187
      FC540677.1
      FC540742.1
    Associated_feature: WBsf717919
      WBsf992787
      WBsf226842
  Experimental_info: RNAi_result: WBRNAi00040189 Inferred_automatically: RNAi_primary
      WBRNAi00007110 Inferred_automatically: RNAi_primary
      WBRNAi00040190 Inferred_automatically: RNAi_primary
      WBRNAi00097920 Inferred_automatically: RNAi_primary
    Expr_pattern (12)
    Drives_construct: WBCnstr00001434
      WBCnstr00001435
      WBCnstr00001436
      WBCnstr00001437
      WBCnstr00001438
      WBCnstr00002907
      WBCnstr00017036
      WBCnstr00022306
      WBCnstr00035825
    Construct_product: WBCnstr00020655
      WBCnstr00020968
      WBCnstr00021051
      WBCnstr00022306
      WBCnstr00035825
    Microarray_results (16)
    Expression_cluster: WBPaper00024970:GABAergic_neuron_specific
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_CoreEnriched
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_embryo_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044736:flat_dev_expression
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055648:spermatheca_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:AFD
      WBPaper00061340:AUA
      WBPaper00061340:AVB
      WBPaper00061340:DA_DB
      WBPaper00061340:DD
      WBPaper00061340:DVC
      WBPaper00061340:FLP
      WBPaper00061340:mu_sph
      WBPaper00061340:PVT
      WBPaper00061340:RIB
      WBPaper00061527:flp-5-F17C11.2
      WBPaper00061651:BDU_enriched
      WBPaper00061651:DVA_enriched
      WBPaper00061651:PVM_enriched
      WBPaper00061651:PVR_enriched
      WBPaper00061651:PVW_enriched
      WBPaper00061651:RIB_enriched
      WBPaper00061651:RIG_enriched
      WBPaper00061651:SMD_enriched
      WBPaper00061651:VD_DD_enriched
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00065005:sams-3(RNAi)_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065158:AFD_enriched
      WBPaper00065623:154
      WBPaper00065841:10_0
      WBPaper00065841:32_0
      WBPaper00065841:44_0
      WBPaper00065841:52_0
      WBPaper00065841:61_0
      WBPaper00065841:75_0
      WBPaper00065841:80_0
      WBPaper00065841:98_0
      WBPaper00065841:103_0
      WBPaper00065841:111_0
      WBPaper00065841:121_0
      WBPaper00065841:122_0
      WBPaper00065841:137_0
      WBPaper00065841:140_0
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00036286:Pattern_I
      WBPaper00037695:LD_DD_6-day
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040876:mir-35_downregulated
      WBPaper00040963:TA100_up
      WBPaper00040963:TA300_up
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00042574:N2_OrsayVirus_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048563:L1_DD_enriched
      WBPaper00053236:Starvation_regulated_GR1307
    Interaction: WBInteraction000525407
      WBInteraction000525408
      WBInteraction000525409
      WBInteraction000534833
      WBInteraction000534834
      WBInteraction000541824
      WBInteraction000576768
  Map_info: Map: III Position: -1.09923 Error: 0.004864
    Positive: Positive_clone: C09E7 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00042846
    WBPaper00043839
    WBPaper00046950
    WBPaper00048350
    WBPaper00048563
    WBPaper00053207
    WBPaper00055155
    WBPaper00056064
    WBPaper00061622
  Remark: Sequence connection from [Aurelio O, Hobert O]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene