WormBase Tree Display for Gene: WBGene00005678

WBGene00005678 Evidence: Person_evidence: WBPerson522
  SMap: S_parent: Sequence: T02D1
  Identity: Version: 1
    Name: CGC_name: sru-15 Person_evidence: WBPerson522
      Sequence_name: T02D1.3
      Molecular_name: T02D1.3
        T02D1.3.1
        CE16323
      Other_name: CELE_T02D1.3 Accession_evidence: NDB BX284604
      Public_name: sru-15
    DB_info: Database: AceView gene 4S339
        WormQTL gene WBGene00005678
        WormFlux gene WBGene00005678
        NDB locus_tag CELE_T02D1.3
        Panther gene CAEEL|WormBase=WBGene00005678|UniProtKB=O45729
          family PTHR46045
        NCBI gene 187983
        RefSeq protein NM_070702.1
        TREEFAM TREEFAM_ID TF315904
        TrEMBL UniProtAcc O45729
        UniProt_GCRP UniProtAcc O45729
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:38 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sru
    Allele (41)
    RNASeq_FPKM (74)
    GO_annotation: 00035080
    Ortholog (21)
    Paralog (121)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T02D1.3
    Corresponding_transcript: T02D1.3.1
  Experimental_info: RNAi_result: WBRNAi00018021 Inferred_automatically: RNAi_primary
      WBRNAi00052203 Inferred_automatically: RNAi_primary
      WBRNAi00094964 Inferred_automatically: RNAi_primary
      WBRNAi00035054 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022544
      Expr1155833
    Drives_construct: WBCnstr00034800
    Construct_product: WBCnstr00034800
    Microarray_results (16)
    Expression_cluster: WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00061527:srj-21-srh-32
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00065841:60_0
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:Resveratrol_regulated_N2
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00056330:mrps-5(RNAi)_upregulated
    Interaction (33)
  Map_info: Map: IV Position: 16.7575 Error: 0.038
    Positive: Positive_clone: T02D1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene