WormBase Tree Display for Gene: WBGene00006415

WBGene00006415 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F38H4
  Identity: Version: 1
    Name: CGC_name: tag-30 Person_evidence: WBPerson201
      Sequence_name: F38H4.7
      Molecular_name: F38H4.7
        F38H4.7.1
        CE17807
        F38H4.7.2
      Other_name: CELE_F38H4.7 Accession_evidence: NDB BX284604
      Public_name: tag-30
    DB_info: Database: AceView gene 4M416
            4M616
        WormQTL gene WBGene00006415
        WormFlux gene WBGene00006415
        NDB locus_tag CELE_F38H4.7
        Panther gene CAEEL|WormBase=WBGene00006415|UniProtKB=Q20183
          family PTHR45774
        NCBI gene 178116
        RefSeq protein NM_001392403.1
        TREEFAM TREEFAM_ID TF106482
        TrEMBL UniProtAcc Q20183
        UniProt_GCRP UniProtAcc Q20183
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tag
    Allele (64)
    Strain: WBStrain00035615
    RNASeq_FPKM (74)
    GO_annotation: 00067437
      00067438
      00067439
      00067440
    Contained_in_operon: CEOP4660
    Ortholog (44)
    Paralog: WBGene00003209 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011815 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013689 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015463 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016803 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in neurogenesis. Predicted to be located in P-body and cytosol. Expressed in body wall musculature; intestinal muscle; and rectal muscle. Is an ortholog of human BTBD2 (BTB domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F38H4.7
    Corresponding_transcript: F38H4.7.1
      F38H4.7.2
    Other_sequence (59)
    Associated_feature: WBsf652257
      WBsf668368
      WBsf997977
      WBsf997978
      WBsf1018290
      WBsf230926
  Experimental_info: RNAi_result: WBRNAi00014587 Inferred_automatically: RNAi_primary
      WBRNAi00046748 Inferred_automatically: RNAi_primary
      WBRNAi00014589 Inferred_automatically: RNAi_primary
      WBRNAi00078336 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1442
      Expr1027253
      Expr1032604
      Expr1150622
      Expr2017269
      Expr2035404
    Drives_construct: WBCnstr00034364
    Construct_product: WBCnstr00034364
    Microarray_results (22)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00037946:EGL-5_interacting
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_glh-1(gk100)_vs_control_day1-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:Parent_of_MI_pm1DR
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:R07E4.5-skp-1_1608
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_5_2
      cgc4489_group_10
      WBPaper00025032:cluster_65
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026952:class_B
      WBPaper00029437:dcr-1_downregulated
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00034739:N2moreDR1350
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_B
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053688:E.faecium_upregulated
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(186_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_SM
      [cgc6390]:spermatogenesis-enriched
    Interaction: WBInteraction000050686
      WBInteraction000114220
      WBInteraction000114221
      WBInteraction000169137
      WBInteraction000169730
      WBInteraction000339566
      WBInteraction000523441
  Map_info: Map: IV Position: 5.31516 Error: 0.001403
    Positive: Positive_clone: F38H4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene