WormBase Tree Display for Gene: WBGene00007226

WBGene00007226 SMap: S_parent: Sequence: C01G6
  Identity: Version: 1
    Name: Sequence_name: C01G6.4
      Molecular_name: C01G6.4
        C01G6.4.1
        CE00866
      Other_name: CELE_C01G6.4 Accession_evidence: NDB BX284602
      Public_name: C01G6.4
    DB_info: Database: AceView gene 2J562
        WormQTL gene WBGene00007226
        WormFlux gene WBGene00007226
        NDB locus_tag CELE_C01G6.4
        Panther gene CAEEL|WormBase=WBGene00007226|UniProtKB=Q17573
          family PTHR46359
        NCBI gene 182077
        RefSeq protein NM_001393150.1
        TREEFAM TREEFAM_ID TF318022
        TrEMBL UniProtAcc Q17573
        UniProt_GCRP UniProtAcc Q17573
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (26)
    Strain: WBStrain00055359
    RNASeq_FPKM (74)
    GO_annotation: 00058545
      00058546
      00058547
      00058548
    Contained_in_operon: CEOP2733
    Ortholog (30)
    Paralog: WBGene00022356 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022115 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Expressed in body wall musculature; intestine; neurons; and non-striated muscle. Is an ortholog of human RNF11 (ring finger protein 11). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C01G6.4
    Corresponding_transcript: C01G6.4.1
    Other_sequence (26)
    Associated_feature: WBsf655338
      WBsf989005
      WBsf989006
      WBsf223625
      WBsf223626
  Experimental_info: RNAi_result: WBRNAi00084230 Inferred_automatically: RNAi_primary
      WBRNAi00039355 Inferred_automatically: RNAi_primary
      WBRNAi00076067 Inferred_automatically: RNAi_primary
      WBRNAi00063620 Inferred_automatically: RNAi_primary
      WBRNAi00094729 Inferred_automatically: RNAi_primary
      WBRNAi00028304 Inferred_automatically: RNAi_primary
      WBRNAi00009951 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4840
      Expr1013606
      Expr1033117
      Expr1143471
      Expr2000311
      Expr2018535
    Drives_construct: WBCnstr00012268
      WBCnstr00033905
    Construct_product: WBCnstr00033905
    Microarray_results (17)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061340:FLP
      WBPaper00061340:Neuroblast_I6_M5
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032948:StarveUp2
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_F
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_ME
    Interaction (28)
  Map_info: Positive: Positive_clone: C01G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 1.0978
  Reference: WBPaper00027315
    WBPaper00030839
    WBPaper00038491
    WBPaper00055090
  Method: Gene