WormBase Tree Display for Gene: WBGene00007603

WBGene00007603 SMap: S_parent: Sequence: C15C6
  Identity: Version: 2
    Name: CGC_name: popl-4 Person_evidence: WBPerson3778
      Sequence_name: C15C6.4
      Molecular_name: C15C6.4
        C15C6.4.1
        CE18505
      Other_name: CELE_C15C6.4 Accession_evidence: NDB BX284601
      Public_name: popl-4
    DB_info: Database: AceView gene 1M805
        WormQTL gene WBGene00007603
        WormFlux gene WBGene00007603
        NDB locus_tag CELE_C15C6.4
        Panther gene CAEEL|WormBase=WBGene00007603|UniProtKB=Q9XVT1
          family PTHR13348
        NCBI gene 173100
        RefSeq protein NM_060682.7
        TREEFAM TREEFAM_ID TF313883
        TrEMBL UniProtAcc Q9XVT1
        UniProt_GCRP UniProtAcc Q9XVT1
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Nov 2019 11:04:57 WBPerson1983 Name_change: CGC_name: popl-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: popl
    Allele (53)
    RNASeq_FPKM (74)
    GO_annotation (17)
    Contained_in_operon: CEOP1664
    Ortholog (34)
    Structured_description: Concise_description: C15C6.4 encodes an ortholog of Pop4 (Rpp29), a protein subunit of theendoribonuclease RNAse P, which cleaves tRNA precursors to producetheir mature 5' end; C15C6.4 is evolutionarily ubiquitous amongeukaryotes. Paper_evidence: WBPaper00028606
            WBPaper00028843
            WBPaper00028845
            WBPaper00028925
          Curator_confirmed: WBPerson567
          Date_last_updated: 06 Jan 2007 00:00:00
      Automated_description: Predicted to enable ribonuclease P RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in cytoplasm. Predicted to be part of ribonuclease MRP complex and ribonuclease P complex. Is an ortholog of human POP4 (POP4 homolog, ribonuclease P/MRP subunit). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C15C6.4
    Corresponding_transcript: C15C6.4.1
    Other_sequence: CBC09453_1
      MH07670
      JI481710.1
    Associated_feature: WBsf985512
      WBsf985513
      WBsf1010865
      WBsf1010866
      WBsf218583
  Experimental_info: RNAi_result: WBRNAi00007934 Inferred_automatically: RNAi_primary
      WBRNAi00024561 Inferred_automatically: RNAi_primary
      WBRNAi00024560 Inferred_automatically: RNAi_primary
      WBRNAi00022284 Inferred_automatically: RNAi_primary
      WBRNAi00040593 Inferred_automatically: RNAi_primary
      WBRNAi00028911 Inferred_automatically: RNAi_primary
      WBRNAi00116899 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018519
      Expr1033276
      Expr1144648
      Expr2000811
      Expr2019029
    Drives_construct: WBCnstr00033615
    Construct_product: WBCnstr00033615
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035211:age-1_vs_age-1_downregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061527:C17E7.4-T06D4.1
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_downregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025032:cluster_56
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037611:RNP-8-associated
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_3
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction (28)
  Map_info: Positive: Positive_clone: C15C6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 13.0727
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064339
  Method: Gene