WormBase Tree Display for Gene: WBGene00008434

WBGene00008434 SMap: S_parent: Sequence: D2089
  Identity: Version: 2
    Name: Sequence_name: D2089.3
      Molecular_name: D2089.3
        D2089.3.1
        CE52036
      Other_name: CELE_D2089.3 Accession_evidence: NDB BX284602
      Public_name: D2089.3
    DB_info: Database: AceView gene 2K952
        WormQTL gene WBGene00008434
        WormFlux gene WBGene00008434
        NDB locus_tag CELE_D2089.3
        Panther gene CAEEL|WormBase=WBGene00008434|UniProtKB=Q18998
          family PTHR31849
        NCBI gene 183962
        RefSeq protein NM_063902.3
        TREEFAM TREEFAM_ID TF313933
        TrEMBL UniProtAcc Q18998
        UniProt_GCRP UniProtAcc Q18998
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 28 Apr 2017 00:49:54 WBPerson1983 Event: Split_into: WBGene00271706
      Split_into: WBGene00271706
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (23)
    RNASeq_FPKM (74)
    Ortholog: WBGene00025979 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
      WBGene00191264 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
      WBGene00053432 Caenorhabditis remanei From_analysis: TreeFam
      CBOVI.g12837 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP31.g16544 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g2220 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      chrII_pilon.g5790 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00271706 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABaraapapaa; excretory cell; germ line; neurons; and pharyngeal cell based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; clk-1; and pgl-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including mianserin; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Cysteine-rich DPF motif domain-containing protein 1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D2089.3
    Corresponding_CDS_history: D2089.3:wp259
    Corresponding_transcript: D2089.3.1
    Associated_feature: WBsf666046
      WBsf666047
      WBsf666048
      WBsf989420
      WBsf989421
      WBsf989422
      WBsf1013059
      WBsf1013060
      WBsf223827
  Experimental_info: Expr_pattern: Expr1028815
      Expr1033664
      Expr1147504
      Expr2002093
      Expr2020318
    Drives_construct: WBCnstr00032965
    Construct_product: WBCnstr00032965
    Microarray_results (12)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038168:lin-35_downregulated
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056826:SGP_biased
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061340:Excretory_cell
      WBPaper00061340:g1A_g1P
      WBPaper00061340:mc2
      WBPaper00061340:NSM_parent
      WBPaper00061340:pm3_pm4_pm5
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:ZK1053.4-C08F1.6
      WBPaper00061651:ADL_enriched
      WBPaper00061651:ASG_enriched
      WBPaper00061651:BDU_enriched
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:PA14_downregulated_AWA
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065623:119
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:71_0
      WBPaper00065841:80_0
      WBPaper00065841:81_0
      WBPaper00065841:98_0
      WBPaper00065841:106_0
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4386_cluster_4_3
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031832:slr-2_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036286:Pattern_I
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:TA300_down
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00042548:miRISC_enriched
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_ME
    Interaction: WBInteraction000169034
      WBInteraction000212667
      WBInteraction000339380
      WBInteraction000387393
      WBInteraction000402701
      WBInteraction000427497
      WBInteraction000438130
  Map_info: Positive: Positive_clone: D2089 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 3.12323
  Method: Gene