WormBase Tree Display for Gene: WBGene00008968

WBGene00008968 SMap: S_parent: Sequence: F20C5
  Identity: Version: 2
    Name: CGC_name: elli-1 Paper_evidence: WBPaper00050743
          Person_evidence: WBPerson2113
      Sequence_name: F20C5.3
      Molecular_name (12)
      Other_name: CELE_F20C5.3 Accession_evidence: NDB BX284604
      Public_name: elli-1
    DB_info: Database: AceView gene 4J516
        WormQTL gene WBGene00008968
        WormFlux gene WBGene00008968
        NDB locus_tag CELE_F20C5.3
        NCBI gene 184716
        RefSeq protein NM_001268396.2
            NM_001268398.3
            NM_001268399.3
            NM_001268397.3
        SwissProt UniProtAcc D3YT16
        UniProt_GCRP UniProtAcc D3YT16
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Mar 2017 10:16:47 WBPerson2970 Name_change: CGC_name: elli-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: elli
    Allele (34)
    Strain: WBStrain00006432
      WBStrain00006415
      WBStrain00006426
      WBStrain00006428
      WBStrain00006430
      WBStrain00006434
      WBStrain00006424
      WBStrain00006423
    RNASeq_FPKM (74)
    GO_annotation: 00007424
      00007425
      00007426
      00007427
      00007428
      00007429
      00007430
    Contained_in_operon: CEOP4609
    Ortholog (13)
    Structured_description: Automated_description: Involved in P granule assembly and embryo development. Located in cytoplasm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F20C5.3a
      F20C5.3b
      F20C5.3c
      F20C5.3d
    Corresponding_CDS_history: F20C5.3:wp109
      F20C5.3b:wp220
      F20C5.3c:wp220
    Corresponding_transcript: F20C5.3a.1
      F20C5.3b.1
      F20C5.3c.1
      F20C5.3d.1
    Associated_feature: WBsf652012
      WBsf668123
      WBsf230464
      WBsf230465
  Experimental_info: RNAi_result: WBRNAi00013606 Inferred_automatically: RNAi_primary
      WBRNAi00045088 Inferred_automatically: RNAi_primary
      WBRNAi00110548 Inferred_automatically: RNAi_primary
      WBRNAi00031161 Inferred_automatically: RNAi_primary
      WBRNAi00110547 Inferred_automatically: RNAi_primary
      WBRNAi00061538 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13273
      Expr13274
      Expr1028932
      Expr1033902
      Expr1149037
      Expr2011277
      Expr2029513
    Drives_construct: WBCnstr00032560
    Construct_product: WBCnstr00032560
    Regulate_expr_cluster: WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050743:elli-1(sam-3)_upregulated
    Microarray_results (23)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038118:stress_downregulated_N2
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_downregulated_embryo
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057154:HeatShock_upregulated_miRNA-target
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00059987:Wounding_downregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:DVC_parent
      WBPaper00061340:mu_int_mu_anal
      WBPaper00061527:T24D1.3-egg-1
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00062715:blmp-1(s71)_downregulated
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064727:daf-2(e1370)_downregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065225:nhr-42(tm1375)_downregulated_uninfected
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00050407:hsp-6(RNAi)_upregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
    Interaction (21)
  Map_info: Map: IV Position: 3.96004
    Positive: Positive_clone: F20C5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00050743
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene