WormBase Tree Display for Gene: WBGene00009200

WBGene00009200 SMap: S_parent: Sequence: F28C1
  Identity: Version: 1
    Name: Sequence_name: F28C1.1
      Molecular_name: F28C1.1
        F28C1.1.1
        CE20729
      Other_name: CELE_F28C1.1 Accession_evidence: NDB BX284605
      Public_name: F28C1.1
    DB_info: Database: AceView gene 5M933
        WormQTL gene WBGene00009200
        WormFlux gene WBGene00009200
        NDB locus_tag CELE_F28C1.1
        Panther gene CAEEL|WormBase=WBGene00009200|UniProtKB=Q19854
          family PTHR13161
        NCBI gene 179705
        RefSeq protein NM_073723.4
        TREEFAM TREEFAM_ID TF351621
        TrEMBL UniProtAcc Q19854
        UniProt_GCRP UniProtAcc Q19854
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (80)
    Strain: WBStrain00037829
    RNASeq_FPKM (74)
    Ortholog (33)
    Paralog: WBGene00006359 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in germ line; head mesodermal cell; neurons; and rectal epithelium based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; age-1; and hsf-1 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including D-glucose; bisphenol S; and Linolenic Acids based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Alternative splicing regulator; Phosphorylation site; Suppressor of white apricot, N-terminal domain; and Suppressor of white apricot. Is an ortholog of human CLASRP (CLK4 associating serine/arginine rich protein). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28C1.1
    Corresponding_transcript: F28C1.1.1
    Other_sequence (13)
    Associated_feature: WBsf647376
      WBsf661898
      WBsf661899
      WBsf1001584
      WBsf232651
      WBsf232652
  Experimental_info: RNAi_result: WBRNAi00045798 Inferred_automatically: RNAi_primary
      WBRNAi00014032 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015051
      Expr1034012
      Expr1149710
      Expr2003094
      Expr2021308
    Drives_construct: WBCnstr00032377
    Construct_product: WBCnstr00032377
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00035211:age-1_vs_N2_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00049954:BPS_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052868:ALA_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057254:MWCNT_downregulated_mRNA
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059334:SACY-1_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:F_U
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:Y32B12B.2-F28C1.1
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00040823:alg-1(gk214)_downregulated
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:intrinsic
    Interaction (29)
  Map_info: Positive: Positive_clone: F28C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 4.24703
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene