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WormBase Tree Display for Gene: WBGene00009539

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Name Class

WBGene00009539SMapS_parentSequenceF38C2
IdentityVersion1
Name (4)
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (29)
StrainWBStrain00037597
RNASeq_FPKM (74)
GO_annotation00034583
00034584
00034585
00117188
00117189
Ortholog (53)
Paralog (20)
Structured_descriptionConcise_descriptionF38C2.7 encodes a CCCH tandem zinc finger (TZF) protein; based upon its sequence similarity to other TZF proteins, such as MEX-5 and POS-1, the product of F38C2.7 is predicted to function as an RNA-binding protein.Paper_evidenceWBPaper00029038
Curator_confirmedWBPerson1843
Date_last_updated18 Sep 2007 00:00:00
Automated_descriptionPredicted to enable mRNA 3'-UTR binding activity. Predicted to be located in cytosol. Expressed widely. Human ortholog(s) of this gene implicated in breast cancer. Is an ortholog of human ZFP36 (ZFP36 ring finger protein); ZFP36L1 (ZFP36 ring finger protein like 1); and ZFP36L2 (ZFP36 ring finger protein like 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:1612Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12862)
EFO:MONDO:0014769Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1108)
Molecular_infoCorresponding_CDSF38C2.7
Corresponding_transcriptF38C2.7.1
Associated_featureWBsf978618
Transcription_factorWBTranscriptionFactor001007
Experimental_infoRNAi_resultWBRNAi00031959Inferred_automaticallyRNAi_primary
WBRNAi00014558Inferred_automaticallyRNAi_primary
WBRNAi00046704Inferred_automaticallyRNAi_primary
Expr_patternExpr7548
Expr10315
Expr10316
Expr1034168
Expr1150585
Expr2003477
Expr2021692
Drives_constructWBCnstr00012693
WBCnstr00015250
WBCnstr00032116
Construct_productWBCnstr00016548
WBCnstr00016559
WBCnstr00032116
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035197:fer-1_upregulated
WBPaper00037950:A-class-motor-neurons_embryo_enriched
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_embryo_enriched
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038104:DATS_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00045774:clk-1_upregulated
WBPaper00045774:clk-1_upregulated_CoQ10_dependent
WBPaper00046338:pharynx_unique
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054191:H3.3(null)_L1_upregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055386:eat-2(ad465)_downregulated
WBPaper00055944:C.butyricum_vs_OP50_downregulated
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056039:hda-6(ok3203)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00059117:B.subtilis_downregulated
WBPaper00059426:Ag-nanoparticles_downregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059728:20ug_cholesterol_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060886:spr-5(by101)_upregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:g2
WBPaper00061340:RIA_parent
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_downregulated
WBPaper00061527:Y116A8C.19-F38C2.7
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00064156:lbp-3(overexpress)_downregulated
WBPaper00064505:tamoxifen_upregulated
WBPaper00065392:Lb.delbrueckii_downregulated
WBPaper00065835:Day5_vs_Day1_upregulated
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:Cisplatin_downregulated_diploid
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066232:ash-2(RNAi)_upregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
cgc4489_group_18
WBPaper00025032:cluster_72
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027111:rrf-3(pk1426)_upregulated
WBPaper00029437:dcr-1_downregulated
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036286:Pattern_D
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048567:dnj-14_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00050538:Fasting_upregulated_cholesterol-dependent
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_11
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(53_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SET
[cgc5767]:expression_class_SE_pi(23_min)
Interaction (246)
Map_infoPositivePositive_cloneF38C2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV14.7534
MethodGene