WormBase Tree Display for Gene: WBGene00011872

WBGene00011872 SMap: S_parent: Sequence: T20G5
  Identity: Version: 2
    Name: CGC_name: blos-1 Person_evidence: WBPerson253
      Sequence_name: T20G5.10
      Molecular_name: T20G5.10
        T20G5.10.1
        CE51581
      Other_name: CELE_T20G5.10 Accession_evidence: NDB BX284603
      Public_name: blos-1
    DB_info: Database: AceView gene 3L300
        WormQTL gene WBGene00011872
        WormFlux gene WBGene00011872
        NDB locus_tag CELE_T20G5.10
        Panther gene CAEEL|WormBase=WBGene00011872|UniProtKB=Q22616
          family PTHR13073
        NCBI gene 176435
        RefSeq protein NM_066861.5
        SwissProt UniProtAcc Q22616
        TREEFAM TREEFAM_ID TF314443
        UniProt_GCRP UniProtAcc Q22616
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 31 Aug 2012 11:56:39 WBPerson2970 Name_change: CGC_name: blos-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: blos
    Allele (16)
    Strain: WBStrain00037623
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP3660
    Ortholog (34)
    Structured_description: Automated_description: Involved in endosomal transport. Predicted to be located in cytosol; mitochondrial intermembrane space; and mitochondrial matrix. Predicted to be part of BLOC-1 complex. Expressed in excretory cell; intestine; and nervous system. Is an ortholog of human BLOC1S1 (biogenesis of lysosomal organelles complex 1 subunit 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T20G5.10
    Corresponding_CDS_history: T20G5.10:wp253
    Corresponding_transcript: T20G5.10.1
    Other_sequence (27)
    Associated_feature: WBsf651447
      WBsf651448
      WBsf227420
      WBsf227421
  Experimental_info: RNAi_result: WBRNAi00053657 Inferred_automatically: RNAi_primary
      WBRNAi00035720 Inferred_automatically: RNAi_primary
      WBRNAi00006761 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7670
      Expr7976
      Expr1023322
      Expr1035232
      Expr1157212
      Expr2009634
      Expr2027873
    Drives_construct: WBCnstr00012815
      WBCnstr00013040
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00033070:Rhine_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:D1007.4-F33G12.2
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037147:heatshock_upregulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_24h
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(143_min)
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MDET
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction (14)
  Map_info: Map: III Position: 2.01441
    Positive: Positive_clone: T20G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031532
    WBPaper00038491
    WBPaper00052655
    WBPaper00052935
    WBPaper00055090
    WBPaper00064980
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene