WormBase Tree Display for Gene: WBGene00011882

WBGene00011882 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 2
    Name: CGC_name: nstp-9 Person_evidence: WBPerson2553
            WBPerson261
      Sequence_name: T21B6.5
      Molecular_name: T21B6.5
        T21B6.5.1
        CE53576
      Other_name: CELE_T21B6.5 Accession_evidence: NDB BX284606
      Public_name: nstp-9
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 15 Feb 2011 15:46:23 WBPerson2970 Name_change: CGC_name: nstp-9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nstp
    Allele (57)
    Strain: WBStrain00033046
    RNASeq_FPKM (74)
    GO_annotation: 00010693
      00010694
      00010695
      00010696
      00010697
      00010698
      00010699
    Ortholog (29)
    Paralog: WBGene00008237 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00005025 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010442 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021637 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable GDP-fucose transmembrane transporter activity and antiporter activity. Predicted to be involved in GDP-fucose import into Golgi lumen and protein O-linked fucosylation. Predicted to be located in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Is an ortholog of human SLC35C1 (solute carrier family 35 member C1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070255 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:20197)
  Molecular_info: Corresponding_CDS: T21B6.5
    Corresponding_CDS_history: T21B6.5:wp196
      T21B6.5:wp272
    Corresponding_transcript: T21B6.5.1
    Other_sequence: JI473410.1
  Experimental_info: RNAi_result: WBRNAi00053707 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026665
      Expr1157258
      Expr2014503
      Expr2032742
    Microarray_results (12)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L3
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056617:adr-1_upregulated_L4_transcript
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:C54G4.4-Y45F3A.8
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062347:blmp-1(tm548)_downregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062672:dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00066110:Cisplatin_upregulated_tetraploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00036123:Cadmium_regulated
      WBPaper00040116:pRJ-FR.5_down_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
    Interaction: WBInteraction000340998
      WBInteraction000469819
      WBInteraction000474641
      WBInteraction000474642
  Map_info: Map: X Position: 2.6933 Error: 0.004126
    Positive: Positive_clone: T21B6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00037686
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene