WormBase Tree Display for Gene: WBGene00012028

WBGene00012028 SMap: S_parent: Sequence: T25E12
  Identity: Version: 2
    Name: CGC_name: srz-99 Person_evidence: WBPerson522
      Sequence_name: T25E12.13
      Molecular_name: T25E12.13
        T25E12.13.1
        CE37558
      Other_name: CELE_T25E12.13 Accession_evidence: NDB BX284605
      Public_name: srz-99
    DB_info: Database: AceView gene 5R211
        WormQTL gene WBGene00012028
        WormFlux gene WBGene00012028
        NDB locus_tag CELE_T25E12.13
        NCBI gene 3564956
        RefSeq protein NM_001028985.1
        TREEFAM TREEFAM_ID TF320520
        TrEMBL UniProtAcc Q86D02
        UniProt_GCRP UniProtAcc Q86D02
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 31 Aug 2004 10:04:31 WBPerson1971 Name_change: CGC_name: srz-99
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: srz
    Allele (37)
    RNASeq_FPKM (74)
    GO_annotation: 00083104
    Ortholog: WBGene00041145 Caenorhabditis briggsae From_analysis: OMA
      WBGene00216753 Caenorhabditis japonica From_analysis: Inparanoid_8
      chrV_pilon.g17248 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (65)
    Structured_description: Automated_description: Predicted to be located in membrane. Expressed in ADLL and ADLR. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T25E12.13
    Corresponding_CDS_history: T25E12.13:wp132
    Corresponding_transcript: T25E12.13.1
  Experimental_info: Expr_pattern: Expr6762
      Expr14209
      Expr1157679
      Expr2016929
    Drives_construct: WBCnstr00003683
      WBCnstr00030188
    Construct_product: WBCnstr00030188
    Microarray_results: A_12_P105230
      GPL19516_CGZ0036808
      GPL21109_T25E12.13
      GPL8304_CE_WBGene00012028_A
      GPL8673_T25E12_13P00022
      GPL8673_T25E12_13P00221
      GPL8673_T25E12_13P00386
    Expression_cluster: WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00043945:MeHg_upregulated
      WBPaper00044030:nhr-8(hd117)_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:skn-1(RNAi)_downregulated
      WBPaper00049266:NaAsO2-Stress_regulated_N2
      WBPaper00049498:npr-1(ur89)_regulated_5
      WBPaper00050096:P.aeruginosa_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056471:flcn-1(ok975)_upregulated
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00057196:raga-1(ok386)_upregulated)
      WBPaper00057347:nhr-14(tm1473)_upreglated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059754:P.aeruginosa_PA14_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00062156:jmjd-1.2(zr1010)_downregulated
      WBPaper00062156:jmjd-5(zr1234)_updownregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062184:PA14_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062684:pathogen_upregulated_N2
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00065158:AFD_enriched
      WBPaper00065746:tmc-1(rg1003)_downregulated
      WBPaper00065841:81_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045673:colistin_upregulated
      WBPaper00055899:2,4-Dinitroanisole_regulated
    SAGE_tag: SAGE:caacataaac Strand: Antisense
      SAGE:tagtttatta Strand: Antisense
      SAGE:tgcttcgtca Strand: Sense
        Unambiguously_mapped
      SAGE:tgttgtgggg Strand: Antisense
  Map_info: Map: V Position: 11.118 Error: 0.006449
    Positive: Positive_clone: T25E12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene