WormBase Tree Display for Gene: WBGene00012972

WBGene00012972 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 2
    Name: CGC_name: rsa-2 Person_evidence: WBPerson283
      Sequence_name: Y48A6B.11
      Molecular_name: Y48A6B.11a
        Y48A6B.11a.1
        CE24379
        Y48A6B.11c
        CE54304
        Y48A6B.11c.1
      Other_name: CELE_Y48A6B.11 Accession_evidence: NDB BX284603
      Public_name: rsa-2
    DB_info: Database: AceView gene 3M157
        WormQTL gene WBGene00012972
        WormFlux gene WBGene00012972
        NDB locus_tag CELE_Y48A6B.11
        NCBI gene 176536
        RefSeq protein NM_001395774.1
            NM_001027715.3
        SwissProt UniProtAcc G5EFV3
        TrEMBL UniProtAcc A0A7R9SUN5
        UniProt_GCRP UniProtAcc G5EFV3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Feb 2007 09:34:11 WBPerson2970 Name_change: CGC_name: rsa-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rsa
    Allele (93)
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP3716
    Ortholog (19)
    Structured_description: Automated_description: Enables beta-catenin binding activity and protein-macromolecule adaptor activity. Involved in embryonic digestive tract development; mitotic spindle organization; and protein localization to organelle. Located in centrosome. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48A6B.11a
      Y48A6B.11c
    Corresponding_CDS_history: Y48A6B.11b:wp279
    Corresponding_transcript: Y48A6B.11a.1
      Y48A6B.11c.1
    Other_sequence: CRC04471_1
      CBC09730_1
      CRC04382_1
      CR03366
      MH04799
    Associated_feature: WBsf645599
      WBsf659564
      WBsf659565
      WBsf981584
      WBsf994255
      WBsf1015919
  Experimental_info: RNAi_result: WBRNAi00009347 Inferred_automatically: RNAi_primary
      WBRNAi00026747 Inferred_automatically: RNAi_primary
      WBRNAi00056859 Inferred_automatically: RNAi_primary
      WBRNAi00037215 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4520
      Expr4521
      Expr12866
      Expr1023560
      Expr1035752
      Expr1160312
      Expr2015547
      Expr2033782
    Drives_construct: WBCnstr00022914
    Construct_product: WBCnstr00022914
    Antibody (3)
    Microarray_results (25)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050015:ifg-1(RNAi)_upregulated
      WBPaper00050193:cec-4(ok3124)_downregulated_L1
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051039:germline_enriched
      WBPaper00051265:F1_morc-1(tm6048)_downregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059027:neuron-synapses_enriched
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:ABarpaaa_lineage
      WBPaper00061340:ADA_ADE_grandparent
      WBPaper00061340:ADL_parent
      WBPaper00061340:AIN_parent
      WBPaper00061340:AMso_parent
      WBPaper00061340:ASE_parent
      WBPaper00061340:ASI_parent
      WBPaper00061340:ASK_parent
      WBPaper00061340:AVH_parent
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:Ciliated_non_amphid_neuron
      WBPaper00061340:DVC_parent
      WBPaper00061340:g2_parent
      WBPaper00061340:GLR
      WBPaper00061340:I2_grandparent
      WBPaper00061340:IL1_parent
      WBPaper00061340:M1_parent
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_AIZ_FLP_RMG
      WBPaper00061340:Neuroblast_ASE_ASJ_AUA
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Neuroblast_ASH_RIB
      WBPaper00061340:Neuroblast_ASJ_AUA
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Neuroblast_HSN_PHB
      WBPaper00061340:Neuroblast_IL1_IL2
      WBPaper00061340:Neuroblast_M2_M3
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:OLL_parent
      WBPaper00061340:OLQ_grandparent
      WBPaper00061340:OLQ_parent
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_AMsh_URB
      WBPaper00061340:Parent_of_exc_gland_AVK
      WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
      WBPaper00061340:Parent_of_hyp3_ILsoDx
      WBPaper00061340:Pharyngeal_neuron
      WBPaper00061340:PLM_ALN_grandparent
      WBPaper00061340:PLM_ALN_great_grandparent
      WBPaper00061340:PVQ_parent
      WBPaper00061340:RIA_parent
      WBPaper00061340:RIC_parent
      WBPaper00061340:RID_parent
      WBPaper00061340:RIM_parent
      WBPaper00061340:RME_LR_parent
      WBPaper00061340:URA_parent
      WBPaper00061527:F54E7.8-orc-5_6376
      WBPaper00061527:let-99_22239-such-1
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062590:Aging_upregulated_neuron
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065841:6_0
      WBPaper00065841:6_1
      WBPaper00065841:6_3
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_11
      WBPaper00025032:cluster_158
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00040426:CYE-1_CDK-2AF_upregulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040821:Au-NP_regulated
      WBPaper00040963:TA100_down
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00055435:AuNPs_downregulated
      [cgc5767]:cluster_77
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_F
    Interaction (35)
  Map_info: Map: III Position: 5.88345 Error: 0.005495
    Positive: Positive_clone: Y48A6B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028993
    WBPaper00032092
    WBPaper00043631
    WBPaper00045606
    WBPaper00046623
    WBPaper00047475
    WBPaper00048324
    WBPaper00051102
    WBPaper00052241
    WBPaper00057728
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene