WormBase Tree Display for Gene: WBGene00013422

WBGene00013422 SMap: S_parent: Sequence: Y66A7AL
  Identity: Version: 2
    Name: CGC_name: popl-5 Person_evidence: WBPerson3778
      Sequence_name: Y66A7A.2
      Molecular_name: Y66A7A.2a
        Y66A7A.2a.1
        CE22751
        Y66A7A.2b
        CE46435
        Y66A7A.2b.1
      Other_name: CELE_Y66A7A.2 Accession_evidence: NDB BX284603
      Public_name: popl-5
    DB_info: Database: AceView gene 3M576
        WormQTL gene WBGene00013422
        WormFlux gene WBGene00013422
        NDB locus_tag CELE_Y66A7A.2
        Panther gene CAEEL|WormBase=WBGene00013422|UniProtKB=G5EF59
          family PTHR10993
        NCBI gene 176577
        RefSeq protein NM_001268200.3
            NM_001268199.4
        TREEFAM TREEFAM_ID TF317496
        TrEMBL UniProtAcc G5EF59
            G2HK18
        UniProt_GCRP UniProtAcc G5EF59
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Nov 2019 11:04:57 WBPerson1983 Name_change: CGC_name: popl-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: popl
    Allele (34)
    Strain: WBStrain00052062
      WBStrain00052060
      WBStrain00049380
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP3854
      CEOP3724
    Ortholog (28)
    Paralog: WBGene00044130 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Concise_description: Y66A7A.2 encodes an ortholog of Pop5, a protein subunit shared by theendoribonucleases RNase MRP and RNAse P; RNAse MRP cleavesmitochondrial RNA in mitochondrial DNA synthesis, nucleolar pre-rRNA inribosome synthesis, and at least one mRNA (CLB2) involved in cell-cycleregulation; RNAse P cleaves tRNA precursors to produce their mature 5'end; Y66A7A.2 is evolutionarily ubiquitous among eukaryotes. Paper_evidence: WBPaper00028606
            WBPaper00028843
            WBPaper00028845
            WBPaper00028925
          Curator_confirmed: WBPerson567
          Date_last_updated: 06 Jan 2007 00:00:00
      Automated_description: Predicted to enable ribonuclease P RNA binding activity and ribonuclease P activity. Predicted to be involved in rRNA processing and tRNA processing. Predicted to be located in nucleolus. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Is an ortholog of human POP5 (POP5 homolog, ribonuclease P/MRP subunit). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y66A7A.2a
      Y66A7A.2b
    Corresponding_transcript: Y66A7A.2a.1
      Y66A7A.2b.1
    Other_sequence: MH10043
      FG350781.1
      CBC09807_1
      MH02731
      DN557937.1
      LSC00923_1
      CJC10938_1
    Associated_feature: WBsf994399
      WBsf227580
  Experimental_info: RNAi_result: WBRNAi00057919 Inferred_automatically: RNAi_primary
      WBRNAi00057920 Inferred_automatically: RNAi_primary
      WBRNAi00037712 Inferred_automatically: RNAi_primary
      WBRNAi00021248 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022404
      Expr1035995
      Expr1161354
      Expr2008171
      Expr2026411
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045971:tunicamycin_upregulated_RtcB(null)
      WBPaper00048762:FOG-3_associated
      WBPaper00048988:neuron_expressed
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:cyn-10_19153-K12H4.2
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4386_cluster_6_6
      cgc4489_group_5
      WBPaper00025032:cluster_171
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031832:slr-2_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_3h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_8
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(41_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction: WBInteraction000179420
      WBInteraction000201683
      WBInteraction000242531
      WBInteraction000300297
      WBInteraction000354728
      WBInteraction000426670
  Map_info: Map: III Position: 10.0179
    Positive: Positive_clone: Y66A7A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene