WormBase Tree Display for Gene: WBGene00015412

WBGene00015412 SMap: S_parent: Sequence: C04C3
  Identity: Version: 2
    Name: CGC_name: lgc-9 Paper_evidence: WBPaper00029376
          Person_evidence: WBPerson1430
      Sequence_name: C04C3.2
      Molecular_name: C04C3.2
        C04C3.2.1
        CE29558
      Other_name: CELE_C04C3.2 Accession_evidence: NDB BX284604
      Public_name: lgc-9
    DB_info: Database: AceView gene 4E181
        WormQTL gene WBGene00015412
        WormFlux gene WBGene00015412
        NDB locus_tag CELE_C04C3.2
        Panther gene CAEEL|WormBase=WBGene00015412|UniProtKB=O44452
          family PTHR18945
        NCBI gene 182195
        RefSeq protein NM_067940.5
        TrEMBL UniProtAcc O44452
        UniProt_GCRP UniProtAcc O44452
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 May 2007 16:58:23 WBPerson2970 Name_change: CGC_name: lgc-9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (58)
    Strain: WBStrain00035012
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (27)
    Paralog (100)
    Structured_description: Automated_description: Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C04C3.2
    Corresponding_transcript: C04C3.2.1
    Other_sequence (11)
    Associated_feature: WBsf995956
      WBsf1017075
      WBsf228098
  Experimental_info: RNAi_result: WBRNAi00102737 Inferred_automatically: RNAi_primary
      WBRNAi00039583 Inferred_automatically: RNAi_primary
      WBRNAi00010100 Inferred_automatically: RNAi_primary
      WBRNAi00028416 Inferred_automatically: RNAi_primary
      WBRNAi00066357 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011992
      Expr1143686
      Expr1200295
      Expr2013140
      Expr2031372
    Drives_construct: WBCnstr00028865
    Construct_product: WBCnstr00028865
    Microarray_results (17)
    Expression_cluster: WBPaper00024704:Soluble_protein
      WBPaper00033065:isp-1-1(qm150)_downregulated
      WBPaper00037950:A-class-motor-neurons_embryo_enriched
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00048988:neuron_expressed
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:Parent_of_K_Kprime
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00062103:neuron_enriched
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00065841:10_0
      WBPaper00065841:29_0
      WBPaper00065841:36_2
      WBPaper00065841:44_0
      WBPaper00065841:44_1
      WBPaper00065841:55_0
      WBPaper00065841:67_0
      WBPaper00065841:72_0
      WBPaper00065841:100_0
      WBPaper00065841:121_0
      WBPaper00065841:130_0
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00042548:miRISC_enriched
    Interaction: WBInteraction000031113
      WBInteraction000209003
      WBInteraction000384591
      WBInteraction000400265
      WBInteraction000512397
      WBInteraction000512398
      WBInteraction000512399
  Map_info: Map: IV Position: -4.44598 Error: 0.043633
    Positive: Positive_clone: C04C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064898
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene