WormBase Tree Display for Gene: WBGene00016216

WBGene00016216 SMap: S_parent: Sequence: C29F9
  Identity: Version: 2
    Name: CGC_name: pals-22 Person_evidence: WBPerson260
      Sequence_name: C29F9.1
      Molecular_name: C29F9.1
        WP:CE08449
        CE08449
        C29F9.1.1
      Other_name: CELE_C29F9.1 Accession_evidence: NDB BX284603
      Public_name: pals-22
    DB_info: Database: AceView gene 3A751
        WormQTL gene WBGene00016216
        WormFlux gene WBGene00016216
        NDB locus_tag CELE_C29F9.1
        NCBI gene 175180
        RefSeq mRNA NM_064751.1
          protein NP_497152.1
            NM_064751.4
        TREEFAM TREEFAM_ID TF343430
        UniProt UniProtAcc Q9TZB2
        TrEMBL UniProtAcc Q9TZB2
        UniProt_GCRP UniProtAcc Q9TZB2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-22
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (124)
    Strain (11)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3012
    Ortholog: WBGene00061028 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00061022 Caenorhabditis remanei From_analysis: TreeFam
      chrIII_pilon.g6711 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00008858 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022345 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020540 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00016281 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Expressed in several structures, including nervous system and pharynx. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C29F9.1
    Corresponding_transcript: C29F9.1.1
    Associated_feature: WBsf224335
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr14986
      Expr16350
      Expr1013157
      Expr1036940
      Expr1145514
      Expr2014695
      Expr2032930
    Drives_construct: WBCnstr00028240
    Construct_product: WBCnstr00028240
      WBCnstr00039127
    Regulate_expr_cluster: WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00064532:pals-22(jy3)_downregulated
      WBPaper00064532:pals-22(jy3)_upregulated
    Antibody: WBAntibody00003057
    Microarray_results (14)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053289:DREAM-target
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:male-vas-deferens_expressed
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:microgravity_upregulated
      WBPaper00061340:Neuroblast_ALA_RMED
      WBPaper00061527:acy-2-F35C5.11
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00038427:lin-54_germline_changed
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00042234:xpa-1_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_N2
    Interaction (36)
  Map_info: Map: III Position: -26.9837
    Positive: Positive_clone: C29F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (25)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene