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WormBase Tree Display for Gene: WBGene00016505

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Name Class

WBGene00016505SMapS_parentSequenceC37C3
IdentityVersion2
NameCGC_namettr-33
Sequence_nameC37C3.13
Molecular_nameC37C3.13
C37C3.13.1
CE32820
Other_nameCELE_C37C3.13Accession_evidenceNDBBX284605
Public_namettr-33
DB_infoDatabaseAceViewgene5I318
WormQTLgeneWBGene00016505
WormFluxgeneWBGene00016505
NDBlocus_tagCELE_C37C3.13
PanthergeneCAEEL|WormBase=WBGene00016505|UniProtKB=Q8I7H9
familyPTHR21700
NCBIgene259631
RefSeqproteinNM_182392.8
SwissProtUniProtAccQ8I7H9
TREEFAMTREEFAM_IDTF315773
UniProt_GCRPUniProtAccQ8I7H9
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
220 Sep 2007 11:48:01WBPerson2970Name_changeCGC_namettr-33
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttr
Allele (19)
StrainWBStrain00034704
RNASeq_FPKM (74)
GO_annotation00083956
00083957
00122104
Contained_in_operonCEOP5567
Ortholog (29)
Paralog (62)
Structured_descriptionAutomated_descriptionPredicted to be located in cell surface and extracellular region. Expressed in head; hypodermis; pharynx; and posterior arcade cell. Used to study Parkinson's disease.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:14330Homo sapiensPaper_evidenceWBPaper00053620
Curator_confirmedWBPerson324
Date_last_updated04 Mar 2019 00:00:00
Models_disease_assertedWBDOannot00000641
WBDOannot00000642
WBDOannot00000643
WBDOannot00000644
WBDOannot00000645
Molecular_infoCorresponding_CDSC37C3.13
Corresponding_transcriptC37C3.13.1
Other_sequence (69)
Associated_featureWBsf652799
WBsf233993
WBsf233994
Experimental_infoRNAi_resultWBRNAi00042105Inferred_automaticallyRNAi_primary
Expr_patternExpr13716
Expr1017171
Expr1146106
Expr2017599
Expr2035738
Drives_constructWBCnstr00028011
WBCnstr00039953
Construct_productWBCnstr00028011
Microarray_results (19)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_regulated_nhr-62_dependent
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045774:clk-1_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050448:KGB-1-induced
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054191:H3.3(null)_embryo_upregulated
WBPaper00054192:cold-shock_upregulated
WBPaper00054410:set-9(rw5)_upregulated
WBPaper00054410:set-26(tm2467)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055364:uaf-1(n4588)_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058665:graphene-oxide_upregulated_mRNA
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00059117:B.subtilis_upregulated
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060764:swsn-1(os22ts)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060921:cat-2(e1112)_downregulated
WBPaper00060921:tdc-1(n3419)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:ant_arc_V
WBPaper00061340:hyp1_hyp2
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061405:S.aureus_downregulated_starvation
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061653:alh-4(hj221)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062590:Aging_upregulated_coelomocyte
WBPaper00062715:blmp-1(s71)_upregulated
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_downregulated
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064505:tamoxifen_downregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00065272:dhgd-1(tm6671)_upregulated
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065759:dot-1.1(knu339)_upregulated
WBPaper00065841:9_0
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065841:21_0
WBPaper00065841:26_0
WBPaper00065841:26_1
WBPaper00065841:26_2
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035560:ahr-1_downregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00045673:colistin_upregulated
Map_infoMapVPosition0.913955Error0.001023
PositivePositive_cloneC37C3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00053620
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene