WormBase Tree Display for Gene: WBGene00020048

WBGene00020048 SMap: S_parent: Sequence: R13A5
  Identity: Version: 2
    Name: CGC_name: lgc-12 Paper_evidence: WBPaper00029376
          Person_evidence: WBPerson1430
      Sequence_name: R13A5.4
      Molecular_name: R13A5.4
        R13A5.4.1
        CE45150
      Other_name: CELE_R13A5.4 Accession_evidence: NDB BX284603
      Public_name: lgc-12
    DB_info: Database: AceView gene 3I653
        WormQTL gene WBGene00020048
        WormFlux gene WBGene00020048
        NDB locus_tag CELE_R13A5.4
        Panther gene CAEEL|WormBase=WBGene00020048|UniProtKB=Q95Y94
          family PTHR18945
        NCBI gene 187855
        RefSeq protein NM_066255.4
        TrEMBL UniProtAcc Q95Y94
        UniProt_GCRP UniProtAcc Q95Y94
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 May 2007 16:58:23 WBPerson2970 Name_change: CGC_name: lgc-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (30)
    Strain: WBStrain00037521
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (18)
    Paralog (100)
    Structured_description: Automated_description: Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Expressed in mechanosensory neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R13A5.4
    Corresponding_CDS_history: R13A5.4:wp176
      R13A5.4:wp216
    Corresponding_transcript: R13A5.4.1
    Other_sequence: PPC10350_1
    Associated_feature: WBsf717930
      WBsf717931
  Experimental_info: RNAi_result: WBRNAi00005520 Inferred_automatically: RNAi_primary
      WBRNAi00051891 Inferred_automatically: RNAi_primary
      WBRNAi00066354 Inferred_automatically: RNAi_primary
      WBRNAi00005880 Inferred_automatically: RNAi_primary
      WBRNAi00102735 Inferred_automatically: RNAi_primary
      WBRNAi00034917 Inferred_automatically: RNAi_primary
      WBRNAi00017819 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9891
      Expr11667
      Expr12561
      Expr1012239
      Expr1155547
      Expr2013093
      Expr2031325
    Drives_construct: WBCnstr00009829
      WBCnstr00014380
      WBCnstr00021617
      WBCnstr00025403
    Construct_product: WBCnstr00025403
    Microarray_results (17)
    Expression_cluster: WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040420:ALM_PLM_enriched
      WBPaper00040420:FLP_enriched
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049377:MWCNT_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050843:sesamin_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:ADE
      WBPaper00061340:ALM_PLM
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061651:ALM_enriched
      WBPaper00061651:AVM_enriched
      WBPaper00061651:FLP_enriched
      WBPaper00061651:PVC_enriched
      WBPaper00061651:PVD_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065841:20_0
      WBPaper00065841:20_1
      WBPaper00065841:20_2
      WBPaper00065841:41_0
      WBPaper00065841:41_1
      WBPaper00065841:41_2
      WBPaper00065841:54_0
      WBPaper00065841:62_0
      WBPaper00065841:70_0
      WBPaper00065841:70_1
      WBPaper00065841:73_0
      WBPaper00065841:107_0
      WBPaper00065841:129_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00036123:Atrazine_regulated
      WBPaper00037695:WC_5-day
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00042067:Cu2+_upregulated_WT
      WBPaper00044091:Bpseudomallei_induced_8h
      [cgc6390]:male_sex-enriched
    Interaction: WBInteraction000337690
      WBInteraction000385545
  Map_info: Map: III Position: -0.668369 Error: 0.000357
    Positive: Positive_clone: R13A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene