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WormBase Tree Display for Gene: WBGene00020857

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Name Class

WBGene00020857SMapS_parentSequenceT27C10
IdentityVersion2
NameCGC_namesrt-62Person_evidenceWBPerson655
Sequence_nameT27C10.2
Molecular_nameT27C10.2
T27C10.2.1
CE45669
Other_nameCELE_T27C10.2Accession_evidenceNDBBX284601
Public_namesrt-62
DB_infoDatabaseAceViewgene1L491
WormQTLgeneWBGene00020857
WormFluxgeneWBGene00020857
NDBlocus_tagCELE_T27C10.2
PanthergeneCAEEL|WormBase=WBGene00020857|UniProtKB=Q9TZM1
familyPTHR23021
NCBIgene188991
RefSeqproteinNM_060440.5
TREEFAMTREEFAM_IDTF316463
TrEMBLUniProtAccQ9TZM1
UniProt_GCRPUniProtAccQ9TZM1
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
202 Dec 2004 09:41:19WBPerson2970Name_changeCGC_namesrt-62
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsrt
Allele (43)
RNASeq_FPKM (74)
GO_annotation00098145
Ortholog (27)
Paralog (66)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST27C10.2
Corresponding_CDS_historyT27C10.2:wp124
T27C10.2:wp137
T27C10.2:wp221
Corresponding_transcriptT27C10.2.1
Other_sequenceJI243468.1
GP00750
MP02162
OOC00940_1
Associated_featureWBsf985122
WBsf1010604
Experimental_infoRNAi_resultWBRNAi00054282Inferred_automaticallyRNAi_primary
WBRNAi00004321Inferred_automaticallyRNAi_primary
Expr_patternExpr1028063
Expr1157831
Expr2016681
Expr2034868
Microarray_results (20)
Expression_clusterWBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00056826:hmc_biased
WBPaper00057041:spc-1(cas971)_downregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00059027:neuron-synapses_depleted
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061340:AWB
WBPaper00061340:RIV
WBPaper00061527:srj-21-srh-32
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065841:50_0
WBPaper00065841:101_0
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030985:Serratia_marcesens_upregulated
Interaction (52)
Map_infoMapIPosition5.74162Error0.044155
PositivePositive_cloneT27C10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene