WormBase Tree Display for Gene: WBGene00022106

WBGene00022106 SMap: S_parent: Sequence: Y71D11A
  Identity: Version: 2
    Name: CGC_name: lgc-46 Person_evidence: WBPerson2536
            WBPerson1430
      Sequence_name: Y71D11A.5
      Molecular_name: Y71D11A.5
        Y71D11A.5.1
        CE29908
      Other_name: CELE_Y71D11A.5 Accession_evidence: NDB BX284603
      Public_name: lgc-46
    DB_info: Database: AceView gene 3C216
        WormQTL gene WBGene00022106
        WormFlux gene WBGene00022106
        NDB locus_tag CELE_Y71D11A.5
        Panther gene CAEEL|WormBase=WBGene00022106|UniProtKB=Q95Y52
          family PTHR18945
        NCBI gene 175279
        RefSeq protein NM_064937.7
        SwissProt UniProtAcc Q95Y52
        TREEFAM TREEFAM_ID TF315490
        UniProt_GCRP UniProtAcc Q95Y52
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Jan 2008 14:49:34 WBPerson2970 Name_change: CGC_name: lgc-46
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (334)
    Strain: WBStrain00032837
      WBStrain00037168
      WBStrain00035016
    RNASeq_FPKM (74)
    GO_annotation (23)
    Ortholog (32)
    Paralog (100)
    Structured_description: Automated_description: Predicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse. Expressed in body wall musculature; nervous system; and pharyngeal muscle cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71D11A.5
    Corresponding_transcript: Y71D11A.5.1
    Other_sequence (39)
    Associated_feature: WBsf991233
      WBsf991234
      WBsf1014183
      WBsf1014184
      WBsf226182
      WBsf226183
  Experimental_info: RNAi_result: WBRNAi00058145 Inferred_automatically: RNAi_primary
      WBRNAi00009414 Inferred_automatically: RNAi_primary
      WBRNAi00026926 Inferred_automatically: RNAi_primary
      WBRNAi00006912 Inferred_automatically: RNAi_primary
      WBRNAi00037766 Inferred_automatically: RNAi_primary
      WBRNAi00085525 Inferred_automatically: RNAi_primary
      WBRNAi00071698 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00012273
      WBCnstr00015043
      WBCnstr00024344
      WBCnstr00039528
    Construct_product: WBCnstr00016679
      WBCnstr00024344
      WBCnstr00042589
    Microarray_results (20)
    Expression_cluster: WBPaper00024970:GABAergic_neuron_specific
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033070:Rhine_upregulated
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00046805:P-granule-RNAi_upregulated_Set1
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00056284:ints-11(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:AIA
      WBPaper00061340:AIY
      WBPaper00061340:AIZ
      WBPaper00061340:DA_DB
      WBPaper00061340:Excretory_gland
      WBPaper00061340:RIV
      WBPaper00061340:SMD
      WBPaper00061340:URX
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:22_0
      WBPaper00065841:44_0
      WBPaper00065841:46_0
      WBPaper00065841:52_0
      WBPaper00065841:55_0
      WBPaper00065841:87_0
      WBPaper00065841:98_0
      WBPaper00065841:112_0
      WBPaper00065841:128_0
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_14
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040876:mir-35_downregulated
      WBPaper00041267:SpaceFlight_Downregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      [cgc6390]:Cluster_A
  Map_info: Map: III Position: -22.7136 Error: 0.009364
    Positive: Positive_clone: Y71D11A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026296
    WBPaper00030839
    WBPaper00048091
    WBPaper00050365
    WBPaper00052797
    WBPaper00055090
    WBPaper00061023
    WBPaper00065804
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene