WormBase Tree Display for Gene: WBGene00022134

WBGene00022134 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: hrpu-2 Person_evidence: WBPerson1824
      Sequence_name: Y71G10AL.1
      Molecular_name: Y71G10AL.1a
        Y71G10AL.1a.1
        CE40883
        Y71G10AL.1b
        CE40884
        Y71G10AL.1b.1
      Other_name: Y71G10AL.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y71G10AR.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y71G10AL.1 Accession_evidence: NDB BX284604
      Public_name: hrpu-2
    DB_info: Database: AceView gene 4C963
        WormQTL gene WBGene00022134
        WormFlux gene WBGene00022134
        NDB locus_tag CELE_Y71G10AL.1
        NCBI gene 177011
        RefSeq protein NM_171284.5
            NM_171899.6
        TREEFAM TREEFAM_ID TF321135
        TrEMBL UniProtAcc G4SPY0
            G4SPY1
        UniProt_GCRP UniProtAcc G4SPY0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Jul 2017 22:54:02 WBPerson2970 Name_change: CGC_name: hrpu-2
      Acquires_merge: WBGene00022136
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hrpu
    Allele (529)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP4655
    Ortholog (24)
    Structured_description: Automated_description: Enriched in AVK based on RNA-seq studies. Is affected by several genes including daf-2; clk-1; and aak-2 based on microarray; RNA-seq; and proteomic studies. Is affected by seven chemicals including rotenone; stavudine; and Chlorpyrifos based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71G10AL.1a
      Y71G10AL.1b
    Corresponding_CDS_history: Y71G10AL.1:wp82
      Y71G10AL.1a:wp174
      Y71G10AL.1b:wp131
      Y71G10AL.1b:wp174
    Corresponding_transcript: Y71G10AL.1a.1
      Y71G10AL.1b.1
    Associated_feature (21)
  Experimental_info: RNAi_result: WBRNAi00069271 Inferred_automatically: RNAi_primary
      WBRNAi00069270 Inferred_automatically: RNAi_primary
      WBRNAi00012396 Inferred_automatically: RNAi_primary
      WBRNAi00069272 Inferred_automatically: RNAi_primary
      WBRNAi00058187 Inferred_automatically: RNAi_primary
      WBRNAi00058189 Inferred_automatically: RNAi_primary
      WBRNAi00069269 Inferred_automatically: RNAi_primary
      WBRNAi00037785 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13443
      Expr13444
      Expr1027656
      Expr1039744
      Expr1161606
      Expr2008294
      Expr2026534
    Drives_construct: WBCnstr00039537
    Construct_product: WBCnstr00039538
    Microarray_results (31)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:nucleus_specific
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053599:mitosis_vs_meiosis_upregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055565:AVK_enriched
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:CFP-1_interacting_protein
      WBPaper00058691:WDR-5.1_interacting_protein
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059605:MUT-16_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:srj-42-srw-113
      WBPaper00061527:Y39G10AR.18_4775-gld-4
      WBPaper00062143:PQN-59_interacting
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062293:clk-1(qm30)_upregulated
      WBPaper00062293:isp-1(qm150)_upregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064080:miR-58_miRNA_interacting
      WBPaper00064201:SNA-3_interacting
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065215:microgravity_upregulated_DESeq2
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      cgc4489_group_5
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035560:ahr-1_downregulated
      WBPaper00037113:CPF_DZN_16C_up-regulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00050538:Fasting_upregulated
    Interaction (17)
  Map_info: Map: IV Position: -9.32184
    Positive: Positive_clone: Y71G10AL Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00053447
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene